onecodex / finch-rsLinks
A genomic minhashing implementation in Rust
☆101Updated 6 months ago
Alternatives and similar repositories for finch-rs
Users that are interested in finch-rs are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Alignment-based gene expression quantification☆30Updated 4 months ago
- ntHash implementation in Rust☆36Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- Rust bindings to minimap2 library☆102Updated 2 weeks ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Compacted and colored de Bruijn graph construction and querying☆91Updated 3 weeks ago
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated 3 weeks ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ☆49Updated 2 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- De Bruijn graphs in Rust☆72Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- ☆22Updated 3 years ago
- ☆50Updated 3 years ago
- The D4 Quantitative Data Format☆169Updated last month
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- Fast DNA search and [host] depletion using minimizers☆96Updated 3 weeks ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated 2 years ago
- Fast approximate string searching☆96Updated this week
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- modular k-mer count matrix and Bloom filter construction for large read collections☆85Updated 2 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Very fast ONT basecaller☆52Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- GFA parser in Rust☆30Updated 2 years ago