Alternatives and similar repositories for finch-rs

Users that are interested in finch-rs are comparing it to the libraries listed below

• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated last month
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated last month
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 5 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆100Updated last month
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated 2 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated this week
• HudsonAlpha / fmlrc2
  ☆47Updated 2 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆80Updated 11 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• 38 / grass
  ☆22Updated 3 years ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• seqan / raptor
  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
  ☆52Updated last week
• dcjones / coitrees
  A very fast interval tree data structure
  ☆125Updated 8 months ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated 2 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 7 months ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆19Updated last week
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• bede / deacon
  DNA search and [host] depletion using minimizers
  ☆86Updated last week
• COMBINE-lab / pufferfish
  An efficient index for the colored, compacted, de Bruijn graph
  ☆109Updated last year
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago