onecodex / finch-rsLinks
A genomic minhashing implementation in Rust
☆99Updated 4 months ago
Alternatives and similar repositories for finch-rs
Users that are interested in finch-rs are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Alignment-based gene expression quantification☆28Updated 2 months ago
- ntHash implementation in Rust☆36Updated last year
- Fasten toolkit, for streaming operations on fastq files☆80Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated 2 years ago
- ☆47Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆78Updated 7 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Rust bindings to minimap2 library☆101Updated last week
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- Compacted and colored de Bruijn graph construction and querying☆84Updated this week
- A SIMD-accelerated library to compute random minimizers☆33Updated 2 weeks ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated 2 weeks ago
- Yet Another Chimeric Read Detector☆81Updated 11 months ago
- ☆50Updated 3 years ago
- ☆22Updated 3 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Updated this week
- Fast DNA search and [host] depletion using minimizers☆88Updated this week
- A very fast interval tree data structure☆125Updated 8 months ago
- De Bruijn graphs in Rust☆70Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 11 months ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆13Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 8 months ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated 5 months ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆84Updated 2 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- ☆57Updated 3 years ago