onecodex / finch-rs
A genomic minhashing implementation in Rust
☆92Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for finch-rs
- ntHash implementation in Rust☆34Updated 3 months ago
- Yet Another Chimeric Read Detector☆72Updated this week
- FASTA and FASTQ parsing in Rust☆70Updated 11 months ago
- Fasten toolkit, for streaming operations on fastq files☆76Updated 8 months ago
- Rust bindings to minimap2 library☆65Updated 2 months ago
- ☆47Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Alignment-based gene expression quantification☆25Updated 5 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated last month
- Substring index for paths in a graph☆60Updated this week
- A very fast interval tree data structure☆111Updated 5 months ago
- Histosketching Using Little Kmers☆55Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆174Updated last week
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆126Updated 8 months ago
- De Bruijn graphs in Rust☆63Updated 3 months ago
- Compacted and colored de Bruijn graph construction and querying☆74Updated this week
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- ☆43Updated last year
- The D4 Quantitative Data Format☆157Updated last month
- Rust utility code☆32Updated 9 months ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆52Updated last week
- Minimal but speedy quality control for nanopore reads in Rust