PASSIONLab / BELLA
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
☆48Updated 2 years ago
Alternatives and similar repositories for BELLA:
Users that are interested in BELLA are comparing it to the libraries listed below
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 7 months ago
- Efficient, parallel compression for terabyte-scale data☆36Updated this week
- ☆12Updated 6 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆30Updated 3 months ago
- ☆17Updated last year
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆46Updated this week
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆69Updated 2 years ago
- Index kmtricks bf matrices☆43Updated last month
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 7 months ago
- Pan-Genomic Matching Statistics☆48Updated 9 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆63Updated 7 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆42Updated last year
- Benchmarking pairwise aligners☆36Updated 9 months ago
- ☆64Updated 9 months ago
- online notebooks for a review of genome sketching☆60Updated 5 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆18Updated last week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated last month
- BWT construction and search☆108Updated 3 weeks ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- Pangenome graphs (review article on graph-based pangenomic methods)☆71Updated 4 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last month
- This is an updated mirror of the original PacBio Read Simulator☆37Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆52Updated 2 years ago
- Adaptive semi-global banded alignment on string graphs☆65Updated 6 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 7 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 5 months ago