Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.
☆13May 11, 2024Updated last year
Alternatives and similar repositories for HPC-GVCW
Users that are interested in HPC-GVCW are comparing it to the libraries listed below
Sorting:
- ☆17Nov 26, 2023Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 10 months ago
- ☆29Apr 16, 2023Updated 2 years ago
- ☆14Feb 22, 2022Updated 4 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- blupADC:An useful tool for animal and plant breeding☆31Nov 22, 2024Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆26Mar 5, 2026Updated 2 weeks ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- ☆44May 8, 2024Updated last year
- Course in population genomics at BiRC☆12Mar 9, 2026Updated last week
- ☆12Apr 10, 2021Updated 4 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Jun 9, 2022Updated 3 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- ☆11Mar 8, 2026Updated last week
- ☆20Feb 24, 2023Updated 3 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Mar 4, 2025Updated last year
- ☆11Mar 14, 2026Updated last week
- Bioinformatics pipelines for Resolwe☆19Feb 16, 2026Updated last month
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ☆37Nov 30, 2023Updated 2 years ago
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- GWAS catalogue for Arabidopsis thaliana☆11Feb 29, 2024Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- ☆31Nov 25, 2019Updated 6 years ago