Ensembl / treebestLinks
TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
☆21Updated 5 years ago
Alternatives and similar repositories for treebest
Users that are interested in treebest are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 7 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated this week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- read and analyse RepeatMasker output☆24Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- ☆15Updated 3 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- ☆22Updated 6 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- ☆15Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆39Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆24Updated this week
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- Structural variant merging tool☆52Updated 10 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago