TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
☆21Oct 9, 2019Updated 7 years ago
Alternatives and similar repositories for treebest
Users that are interested in treebest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ensembl Funcgen Perl API and SQL schema☆15Jul 21, 2025Updated last year
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆18Jun 28, 2024Updated 2 years ago
- The code to run an Ensembl website☆22Sep 9, 2026Updated last month
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- The Ensembl Variation Perl API and SQL schema☆31Sep 23, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Specification document for the Variant Call Format☆12Aug 14, 2013Updated 13 years ago
- ☆11Feb 12, 2022Updated 4 years ago
- Fast, accurate construction of multiple sequence alignments from protein language embeddings☆23Jul 22, 2026Updated 3 months ago
- ☆13Dec 22, 2025Updated 10 months ago
- The Ensembl Compara Perl API and SQL schema☆56Oct 23, 2026Updated last week
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Updated this week
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Oct 14, 2018Updated 8 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- Ensembl Production code☆13Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GitHub Desktop tutorial repository☆14Feb 3, 2026Updated 8 months ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated 2 years ago
- End-to-end provenance tracking throughout transcript merging and interpretation☆19Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- A eukaryotic genome annotation pipeline☆14Oct 20, 2026Updated last week
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated last month
- ☆22Sep 22, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 6 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Oct 12, 2026Updated 2 weeks ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automatically exported from code.google.com/p/figtree☆490May 17, 2026Updated 5 months ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- A parallel wrapper for LTR_FINDER☆57Mar 8, 2026Updated 7 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 4 months ago
- Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines☆18Oct 23, 2026Updated last week
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource☆55Jan 6, 2026Updated 9 months ago