TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
☆21Oct 9, 2019Updated 6 years ago
Alternatives and similar repositories for treebest
Users that are interested in treebest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 4 years ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- ☆15Aug 22, 2023Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computational Analysis of Gene Expression Evolution☆46Apr 17, 2026Updated last month
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- ☆21Sep 22, 2022Updated 3 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆29Dec 1, 2025Updated 5 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated last week
- Web based viewer for small to medium GFA format files, similar to Bandage☆12Nov 14, 2025Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated 2 months ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated last month
- chloroplast genome assembly using long reads data☆17Jul 8, 2025Updated 10 months ago
- ☆16Jul 25, 2021Updated 4 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Apr 29, 2026Updated 3 weeks ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- source code for EVM☆124Nov 29, 2024Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated last month
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- Automatically exported from code.google.com/p/figtree☆470Mar 20, 2026Updated 2 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 3 years ago
- Interface to LZMA compression library☆12Mar 25, 2015Updated 11 years ago
- Code Repository for Building API Development with Node.js, published by Packt☆11Feb 1, 2018Updated 8 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 2 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A program for detection of tRNA genes☆89Nov 16, 2022Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- ☆14May 22, 2025Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago