TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)
☆21Oct 9, 2019Updated 6 years ago
Alternatives and similar repositories for treebest
Users that are interested in treebest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆18Jun 28, 2024Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Oct 14, 2018Updated 7 years ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- ☆22Sep 22, 2022Updated 3 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆30Dec 1, 2025Updated 7 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 5 years ago
- A parallel wrapper for LTR_FINDER☆56Mar 8, 2026Updated 4 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- chloroplast genome assembly using long reads data☆17Jul 8, 2025Updated last year
- ☆16Jul 25, 2021Updated 4 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 3 months ago
- source code for EVM☆126Nov 29, 2024Updated last year
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Jul 7, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 8 months ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- Automatically exported from code.google.com/p/figtree☆484May 17, 2026Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 3 months ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 6 months ago
- Interface to LZMA compression library☆12Mar 25, 2015Updated 11 years ago
- Code Repository for Building API Development with Node.js, published by Packt☆11Feb 1, 2018Updated 8 years ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 4 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆14May 22, 2025Updated last year
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆11Sep 2, 2021Updated 4 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago