Structure variants calling and genotyping scripts for pan-Zea
☆23Nov 17, 2022Updated 3 years ago
Alternatives and similar repositories for panz-SV-pipe
Users that are interested in panz-SV-pipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 4 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆31Oct 31, 2023Updated 2 years ago
- my personal blog by astro☆25Mar 26, 2025Updated last year
- ☆18Nov 26, 2023Updated 2 years ago
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆23May 4, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- ☆11Mar 14, 2026Updated 5 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Onto…☆18Apr 14, 2026Updated 4 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- ☆32Nov 25, 2019Updated 6 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Jan 19, 2022Updated 4 years ago
- This is a modified version of EDTA -- zgtools☆20Aug 26, 2026Updated last week
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆73Oct 23, 2025Updated 10 months ago
- ☆24Jul 29, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Whole Genome Alignment Tools☆224Nov 6, 2025Updated 10 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 8 months ago
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 5 months ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- ☆12Sep 28, 2021Updated 4 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago