vgteam / sv-genotyping-paperView external linksLinks
☆31Nov 25, 2019Updated 6 years ago
Alternatives and similar repositories for sv-genotyping-paper
Users that are interested in sv-genotyping-paper are comparing it to the libraries listed below
Sorting:
- Human pan-genome analysis pipeline☆31Apr 30, 2020Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 9 months ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- ☆44May 8, 2024Updated last year
- Structure variants calling and genotyping scripts for pan-Zea☆22Nov 17, 2022Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- Characterization of Structural Variation in Chinese samples☆18Dec 22, 2021Updated 4 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Scripts for NGS processing☆17Sep 6, 2017Updated 8 years ago
- A program to call variants from genome alignment☆81Apr 29, 2025Updated 9 months ago
- Graph realignment tools for structural variants☆165Dec 8, 2022Updated 3 years ago
- ☆11Dec 15, 2025Updated 2 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 4 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated 10 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆81Mar 25, 2024Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆72Feb 19, 2019Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated last month
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- Population-scale genotyping using pangenome graphs☆195Jan 9, 2025Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- variation discovery using long range information in linked-reads☆15Oct 5, 2021Updated 4 years ago
- Bedfile perturbation tool☆17Sep 29, 2025Updated 4 months ago
- Python library to identify Identical By State regions☆22Mar 19, 2023Updated 2 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Jasmine: SV Merging Across Samples☆240Dec 20, 2024Updated last year
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year