vgteam / sv-genotyping-paper
☆31Updated 5 years ago
Alternatives and similar repositories for sv-genotyping-paper:
Users that are interested in sv-genotyping-paper are comparing it to the libraries listed below
- assembly evaluation tool☆34Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- ☆42Updated 8 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆35Updated 10 months ago
- ☆15Updated 2 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- FastK based version of Merqury☆22Updated last month
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated 2 years ago
- SV calling for diploid assemblies☆23Updated 9 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆28Updated 2 weeks ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 5 months ago
- ☆24Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago