Alternatives and similar repositories for PythonNGSTools

Users that are interested in PythonNGSTools are comparing it to the libraries listed below

• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆18Updated 6 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• LAILAB-CAU / update-Mo17
  ☆27Updated 2 years ago
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 5 months ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆55Updated last week
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 3 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 10 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• ylab-hi / OctopuSV
  Efficient merging of structural variants from multiple SV callers and samples
  ☆12Updated last month
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 5 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆13Updated 2 months ago
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆29Updated 8 months ago
• xuzhougeng / binmapr
  R package for binmap
  ☆13Updated 2 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆17Updated 2 months ago
• MaoYafei / GenoDup-Pipeline
  This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
  ☆25Updated 6 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 10 months ago