liangjiaoxue / PythonNGSToolsLinks
Scripts for NGS processing
☆17Updated 7 years ago
Alternatives and similar repositories for PythonNGSTools
Users that are interested in PythonNGSTools are comparing it to the libraries listed below
Sorting:
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆17Updated 6 years ago
- ☆25Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- ☆22Updated 6 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 4 months ago
- ☆21Updated 5 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆17Updated 2 months ago
- Calculate circos format data of GC content and GC skew from genome data.☆11Updated 10 years ago
- ☆21Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- ☆30Updated 5 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- ☆15Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆28Updated 6 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- A box of genomics tools☆21Updated 4 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated 2 months ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- Yet another Hi-C scaffolding tool☆21Updated 8 months ago
- ☆42Updated last year
- issues for semina "Data Visulization"☆13Updated last month