songtaogui / pan-Zea_constructLinks
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
☆29Updated last year
Alternatives and similar repositories for pan-Zea_construct
Users that are interested in pan-Zea_construct are comparing it to the libraries listed below
Sorting:
- ☆25Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆20Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- ☆16Updated 9 months ago
- ☆42Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated 2 weeks ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated last month
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆14Updated 5 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- conserved non-coding sequence☆14Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 11 months ago
- ☆12Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆15Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆43Updated 2 months ago
- issues for semina "Data Visulization"☆13Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- ☆25Updated 3 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆17Updated 2 months ago
- Scripts for NGS processing☆17Updated 7 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆22Updated last year
- iTAK☆41Updated last year