Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
☆32Oct 31, 2023Updated 3 years ago
Alternatives and similar repositories for pan-Zea_construct
Users that are interested in pan-Zea_construct are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 4 years ago
- Structure variants calling and genotyping scripts for pan-Zea☆23Nov 17, 2022Updated 3 years ago
- my personal blog by astro☆25Mar 26, 2025Updated last year
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆23May 4, 2023Updated 3 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆23Oct 31, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆31Apr 16, 2023Updated 3 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Onto…☆18Apr 14, 2026Updated 6 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- ☆12Jun 12, 2023Updated 3 years ago
- The codes of "the Third Generation Sequencing of 111 rice genomes reveals a huge size of novel genome sequence in the RICE PAN-genome"☆10Mar 29, 2022Updated 4 years ago
- ☆14Jul 27, 2019Updated 7 years ago
- Annotation pipeline for plant genomes by PGSB☆11Nov 12, 2021Updated 4 years ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 5 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆30Sep 13, 2023Updated 3 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated last month
- ☆24May 31, 2024Updated 2 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆74Oct 23, 2025Updated last year
- ☆10Jan 27, 2025Updated last year
- ☆30Mar 4, 2022Updated 4 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆97Jan 14, 2025Updated last year
- ☆15May 3, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- ☆11Mar 14, 2026Updated 7 months ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆112Jun 20, 2026Updated 4 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Oct 20, 2026Updated last week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago