StevenVB12 / Tutorial_pan_genomicsLinks
Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial presents an example using two haplotypes of the optix locus in Heliconius butterflies.
☆19Updated 7 months ago
Alternatives and similar repositories for Tutorial_pan_genomics
Users that are interested in Tutorial_pan_genomics are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- ☆44Updated last year
- ☆16Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆34Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 9 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Construct and Analyze the North American Vitis pangenome☆29Updated 4 months ago
- Scripts for NGS processing☆17Updated 8 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- ☆27Updated 4 months ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- A box of genomics tools☆21Updated 5 years ago
- Genome Annotation Pipeline☆42Updated last year
- ☆14Updated 3 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- ☆31Updated 6 years ago
- Whole Genome Annotation Pipeline☆16Updated 6 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- issues for semina "Data Visulization"☆13Updated last week
- ☆29Updated 3 years ago
- ☆11Updated 2 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago