Alternatives and similar repositories for hot_scan:

Users that are interested in hot_scan are comparing it to the libraries listed below

• xhhuanglab / QTN_scripts
  ☆9Updated 4 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆16Updated 5 years ago
• GaoLei-bio / SV
  ☆14Updated 3 years ago
• wheatgenetics / owwc
  repository for code used in analysis of open wild wheat consortium
  ☆15Updated 3 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 5 years ago
• Uauy-Lab / pangenome-haplotypes
  Scripts to do haplotype analysis on pan genomes.
  ☆21Updated 4 years ago
• zlguu / Rice_Heterosis
  ☆15Updated last year
• yiliao1022 / LASTZ_SV_pipeline
  ☆16Updated 5 years ago
• dawelab / Ab10-Assembly
  B73Ab10 genome assembly methods
  ☆16Updated 3 years ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆15Updated 11 months ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• shanwai1234 / GPWAS
  Genome-Phenome Wide Association Study
  ☆15Updated 2 years ago
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 4 months ago
• caasivfbioinfo / Bol_pangenome
  ☆14Updated last year
• glogsdon1 / sunk-based_assembly
  ☆15Updated 3 years ago
• maiziezhoulab / LRSV_combo
  Long Read Based SV Calling Tools Analysis
  ☆12Updated 10 months ago
• evotools / CattleGraphGenomePaper
  Set of script for the paper on the cattle graph genome
  ☆13Updated 2 years ago
• evodify / allele-specific-expression
  Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)
  ☆11Updated 6 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 6 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆22Updated last year
• schneebergerlab / GameteBinning
  ☆12Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆24Updated 4 years ago
• HuffordLab / Maize_NC358
  The repository for codes developed to generated the Maize NC358 assemblies and analyses.
  ☆11Updated 4 years ago
• caulai / Mo17_genome_assembly
  ☆14Updated 5 years ago
• YaoZhou89 / WGSc
  ☆16Updated 3 years ago
• GonzalezLab / T-lex3
  ☆15Updated 4 years ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 3 years ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆9Updated last year
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago