Easy Metagenome Pipeline
☆584Jun 14, 2026Updated 3 months ago
Alternatives and similar repositories for EasyMetagenome
Users that are interested in EasyMetagenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Easy Amplicon data analysis pipeline☆375Apr 20, 2026Updated 5 months ago
- ☆158Dec 30, 2025Updated 8 months ago
- Interpretation and visualization of microbiome charts☆552Jul 22, 2025Updated last year
- Metagenome analysis pipeline☆101Jul 26, 2021Updated 5 years ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆307Jul 29, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 5 years ago
- Using R language in microbiome analysis☆362May 10, 2023Updated 3 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆47Jun 25, 2020Updated 6 years ago
- ☆29Jan 16, 2024Updated 2 years ago
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- Microbial ecological network visualization clustering☆156Nov 20, 2025Updated 10 months ago
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 4 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- a user-friendly and flexible pipeline for prokaryote genome analysis☆69Jul 15, 2026Updated 2 months ago
- bioBakery tools for meta'omic profiling☆324Aug 4, 2026Updated last month
- A pipeline for nanopore long-read metagenomic analysis.☆61Nov 26, 2025Updated 10 months ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆109Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆293Updated this week
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- Pathogen NGS Documentary☆156Jan 26, 2026Updated 8 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆223Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆155Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Sep 20, 2026Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆253Updated this week
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago
- A comprehensive R package for deep mining microbiome☆196Apr 29, 2026Updated 4 months ago
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated last month
- The second version of the Kraken taxonomic sequence classification system☆941Updated this week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆140Aug 6, 2026Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated 2 years ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆424Sep 10, 2026Updated 2 weeks ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆75Aug 28, 2026Updated last month
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆44Nov 20, 2019Updated 6 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆30Jul 21, 2022Updated 4 years ago
- ☆15Apr 3, 2025Updated last year
- ☆91May 22, 2024Updated 2 years ago