Alternatives and similar repositories for EasyMetagenome

Users that are interested in EasyMetagenome are comparing it to the libraries listed below

• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆295Updated last month
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆283Updated last year
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆327Updated 2 years ago
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆467Updated 3 months ago
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆354Updated last month
• YongxinLiu / Note
  ☆124Updated 3 years ago
• YongxinLiu / EasyMicrobiome
  ☆109Updated 6 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆170Updated 3 weeks ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆367Updated last year
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆424Updated last year
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆325Updated 6 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆416Updated this week
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆446Updated 5 months ago
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆276Updated this week
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆341Updated this week
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆431Updated 8 years ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆144Updated last year
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• jmzeng1314 / my_WGCNA
  ☆277Updated 5 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆114Updated 2 months ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆302Updated 2 weeks ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆232Updated this week
• jmzeng1314 / 5years
  ☆240Updated 5 years ago
• jmzeng1314 / scRNA_smart_seq2
  ☆309Updated 5 years ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆771Updated 7 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆622Updated last year
• usadellab / Trimmomatic
  ☆248Updated last year
• xuzhougeng / Learn-Bioinformatics-by-RNA-seq
  ☆181Updated 7 years ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆340Updated last year
• emblab-westlake / MbioAssy
  ☆14Updated 3 months ago