Alternatives and similar repositories for EasyMetagenome

Users that are interested in EasyMetagenome are comparing it to the libraries listed below

• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆304Updated this week
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆330Updated 2 years ago
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆475Updated 4 months ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆287Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆361Updated 2 months ago
• YongxinLiu / EasyMicrobiome
  ☆111Updated 7 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆426Updated last year
• YongxinLiu / Note
  ☆125Updated 3 years ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆369Updated last year
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆281Updated 3 weeks ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆417Updated last week
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆326Updated 6 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆431Updated 8 years ago
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆346Updated last week
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆625Updated last week
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆171Updated last month
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆144Updated last year
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆448Updated 6 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆343Updated last year
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆424Updated 2 months ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆306Updated this week
• usadellab / Trimmomatic
  ☆253Updated last year
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆120Updated 3 months ago
• jmzeng1314 / 5years
  ☆241Updated 5 years ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆232Updated last week
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆530Updated this week
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆202Updated 10 months ago
• FelixKrueger / TrimGalore
  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…
  ☆511Updated 3 months ago