indexofire / pathongsLinks
Pathogen NGS Documentary
☆151Updated last year
Alternatives and similar repositories for pathongs
Users that are interested in pathongs are comparing it to the libraries listed below
Sorting:
- Metagenome analysis pipeline☆100Updated 4 years ago
- 3D de novo assembly (3D DNA) pipeline☆220Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- ☆133Updated 2 weeks ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 5 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆282Updated 3 months ago
- Read trimming tool for Illumina NGS data.☆148Updated 10 years ago
- TransDecoder source☆299Updated 2 months ago
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆140Updated 6 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated last week
- Any Way to Show Multi genomic Synteny☆213Updated 5 months ago
- Next generation sequencing reads de novo assembler.☆239Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- Classifier for metagenomic sequences☆267Updated 5 months ago
- Genome Assembly and Annotation Service code☆216Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆194Updated 5 months ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆294Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆225Updated last week
- Discovering known and novel miRNAs from small RNA sequencing data☆156Updated last year
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆112Updated last year
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆162Updated 8 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 5 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated last month