Pathogen NGS Documentary
☆155Jan 26, 2026Updated 5 months ago
Alternatives and similar repositories for pathongs
Users that are interested in pathongs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- New version☆34Dec 12, 2016Updated 9 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆43Nov 20, 2019Updated 6 years ago
- 二代测序数据分析☆379Dec 6, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- Interpretation and visualization of microbiome charts☆550Jul 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆136Updated this week
- ☆19Oct 31, 2025Updated 8 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- Easy Metagenome Pipeline☆569Jun 14, 2026Updated last month
- Classifier for metagenomic sequences☆278Apr 15, 2026Updated 3 months ago
- Processing pipeline for pan-genome visulization and exploration☆146Oct 9, 2023Updated 2 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆475Jul 15, 2026Updated last week
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 7 months ago
- 病原微生物高通量测序数据分析笔记☆30Apr 17, 2019Updated 7 years ago
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 6 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆76Updated this week
- Short Read Sequence Typing for Bacterial Pathogens☆149Jun 20, 2021Updated 5 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆425May 20, 2026Updated 2 months ago
- The second version of the Kraken taxonomic sequence classification system☆926Jul 9, 2026Updated 2 weeks ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆471Dec 16, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆144Updated this week
- Kraken taxonomic sequence classification system☆227Sep 27, 2021Updated 4 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- ☆65Jan 25, 2024Updated 2 years ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- ☆152Dec 30, 2025Updated 6 months ago
- A microbial profiling framework for metagenomic analysis☆24Apr 9, 2020Updated 6 years ago
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆474Jul 28, 2023Updated 2 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆221Aug 27, 2025Updated 10 months ago
- A complete pipeline for metagenomic analysis☆451Jul 11, 2026Updated last week