Pathogen NGS Documentary
☆155Jan 26, 2026Updated 4 months ago
Alternatives and similar repositories for pathongs
Users that are interested in pathongs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- New version☆34Dec 12, 2016Updated 9 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆43Nov 20, 2019Updated 6 years ago
- 二代测序数据分析☆378Dec 6, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 3 years ago
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Oct 31, 2025Updated 7 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 months ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆135Apr 16, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 7 months ago
- Easy Metagenome Pipeline☆554Feb 3, 2026Updated 4 months ago
- Classifier for metagenomic sequences☆274Apr 15, 2026Updated last month
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆472May 28, 2026Updated 2 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆145Oct 9, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 6 years ago
- Rapid haploid variant calling and core genome alignment☆586Dec 12, 2025Updated 6 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆421May 20, 2026Updated 3 weeks ago
- Short Read Sequence Typing for Bacterial Pathogens☆148Jun 20, 2021Updated 4 years ago
- 病原微生物高通量测序数据分析笔记☆30Apr 17, 2019Updated 7 years ago
- The second version of the Kraken taxonomic sequence classification system☆912Updated this week
- Application and Python module for average nucleotide identity analyses of microbes.