indexofire / pathongsLinks
Pathogen NGS Documentary
☆151Updated last year
Alternatives and similar repositories for pathongs
Users that are interested in pathongs are comparing it to the libraries listed below
Sorting:
- Metagenome analysis pipeline☆99Updated 4 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- ☆120Updated last month
- Next generation sequencing reads de novo assembler.☆236Updated last year
- 3D de novo assembly (3D DNA) pipeline☆216Updated last year
- Read trimming tool for Illumina NGS data.☆145Updated 10 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated this week
- Fast and accurate de novo assembler for long reads☆395Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆276Updated 7 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆270Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 8 months ago
- Genome Assembly and Annotation Service code☆214Updated last year
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆140Updated 4 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆211Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆350Updated last month
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆274Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆220Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated last month
- TransDecoder source☆297Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆207Updated 2 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 3 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆191Updated last year
- Any Way to Show Multi genomic Synteny☆201Updated 2 months ago
- Classifier for metagenomic sequences☆265Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆276Updated last month
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆320Updated 5 months ago
- Windowed Adaptive Trimming for fastq files using quality☆223Updated 8 years ago