taowenmicro / EasyMultiOmicsLinks
EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research
☆85Updated this week
Alternatives and similar repositories for EasyMultiOmics
Users that are interested in EasyMultiOmics are comparing it to the libraries listed below
Sorting:
- ☆57Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆76Updated 2 weeks ago
- ☆34Updated 3 months ago
- ☆28Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆77Updated 8 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- 微生信生物☆23Updated 6 months ago
- code repo for mobileOG-db☆40Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- ☆50Updated 4 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆59Updated 6 months ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆28Updated 3 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆45Updated 3 weeks ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 4 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago
- This is the source code for ARGs-OAP v2.0 construction☆12Updated 6 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆47Updated 3 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- ☆114Updated last year
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 10 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- ☆17Updated 10 months ago
- R package to predict microbial loads☆16Updated 3 months ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆47Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆15Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago