EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research
☆102Dec 17, 2025Updated 3 months ago
Alternatives and similar repositories for EasyMultiOmics
Users that are interested in EasyMultiOmics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- ☆15Jan 12, 2026Updated 2 months ago
- Microbial ecological network visualization clustering☆144Nov 20, 2025Updated 4 months ago
- 微生信生物☆24Mar 17, 2025Updated last year
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- Network analysis for multi-omics☆106Feb 9, 2026Updated last month
- phyloseq R☆12Sep 18, 2019Updated 6 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆55Nov 26, 2025Updated 3 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Aug 16, 2022Updated 3 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- ☆29Jan 16, 2024Updated 2 years ago
- Easy Metagenome Pipeline☆529Feb 3, 2026Updated last month
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 5 months ago
- Using R language in microbiome analysis☆350May 10, 2023Updated 2 years ago
- ☆17Jun 25, 2025Updated 9 months ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)☆25Apr 22, 2020Updated 5 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Jun 25, 2024Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 4 months ago
- Professional Comprehensive Omics Data Analysis☆32Feb 10, 2026Updated last month
- Integrated Network Analysis Pipeline☆18Dec 19, 2024Updated last year
- LorMe package for R：Lightening One-code Resolving Microbial Ecology Program☆14Jan 13, 2026Updated 2 months ago
- ☆19Apr 1, 2025Updated 11 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Feb 8, 2026Updated last month
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Oct 4, 2021Updated 4 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆29Jul 21, 2022Updated 3 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- R package for microbiome biomarker discovery☆194Feb 19, 2025Updated last year
- code repo for mobileOG-db☆46Nov 6, 2025Updated 4 months ago
- EasyStat☆20Jul 31, 2025Updated 7 months ago
- R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)☆20Dec 17, 2025Updated 3 months ago
- A short tutorial for Tax4Fun2☆25Aug 24, 2024Updated last year
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Easy Amplicon data analysis pipeline☆354Jan 30, 2026Updated last month
- ☆18Jan 14, 2024Updated 2 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆49Updated this week