Alternatives and similar repositories for EasyMultiOmics

Users that are interested in EasyMultiOmics are comparing it to the libraries listed below

• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆53Updated 2 months ago
• qichao1984 / NCyc
  ☆53Updated 5 years ago
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆71Updated 10 months ago
• caozhichongchong / arg_ranker
  ☆35Updated 3 months ago
• EMBL-PKU / BASALT
  Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…
  ☆127Updated this week
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆86Updated last year
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆52Updated 4 years ago
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago
• YunyunGao374 / ProteinCell2023MicrobiomeReview
  MicrobiomeReview
  ☆11Updated 2 years ago
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆46Updated 3 months ago
• YongxinLiu / Culturome
  ☆28Updated 2 years ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆67Updated 2 years ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆18Updated last year
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆14Updated last year
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆82Updated 5 months ago
• emblab-westlake / MbioAssy
  ☆17Updated 7 months ago
• ziyewang / MetaBinner
  ☆63Updated last year
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆50Updated last year
• zhouyunyan / PIGC
  The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
  ☆29Updated 3 years ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆92Updated 7 months ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆108Updated 5 years ago
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆67Updated this week
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆49Updated 2 years ago
• YongxinLiu / EasyMicrobiome
  ☆145Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆70Updated 3 years ago
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆18Updated last year
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆182Updated 3 months ago