EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research
☆108Dec 17, 2025Updated 7 months ago
Alternatives and similar repositories for EasyMultiOmics
Users that are interested in EasyMultiOmics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- Network analysis for multi-omics☆119May 24, 2026Updated 2 months ago
- ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex …☆112Jul 16, 2026Updated last week
- Microbial ecological network visualization clustering☆154Nov 20, 2025Updated 8 months ago
- Using R language in microbiome analysis☆359May 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- LorMe package for R：Lightening One-code Resolving Microbial Ecology Program☆18Updated this week
- Traditional Chinese Medicine Data Analysis and Visualization☆15Jul 13, 2026Updated last week
- phyloseq R☆12Sep 18, 2019Updated 6 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆46Updated this week
- ☆17Jan 12, 2026Updated 6 months ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆35Aug 16, 2022Updated 3 years ago
- 微生信生物☆24Mar 17, 2025Updated last year
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆60Nov 26, 2025Updated 7 months ago
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- R codes and data for 'Smoking, Alcohol consumption, and 24 Gastrointestinal Diseases: Mendelian Randomization Analysis'☆11Mar 5, 2023Updated 3 years ago
- Easy Metagenome Pipeline☆569Jun 14, 2026Updated last month
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 3 months ago
- Interpretation and visualization of microbiome charts☆550Jul 22, 2025Updated last year
- Easy Amplicon data analysis pipeline☆369Apr 20, 2026Updated 3 months ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆41Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆91Dec 27, 2024Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 3, 2026Updated 3 weeks ago
- ☆19Dec 16, 2024Updated last year
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆23Jul 10, 2026Updated 2 weeks ago
- ☆29Jan 16, 2024Updated 2 years ago
- The EasyMultiProfiler package aims to offer a user-friendly and efficient multi-omics data analysis tool on the R platform. It facilitate…☆58May 7, 2026Updated 2 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- ☆63Dec 30, 2020Updated 5 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆232Updated this week
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆84Jun 25, 2026Updated 3 weeks ago
- ☆19Jun 25, 2025Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 8 months ago