P-kai / EasyNanoMetaLinks
A pipeline for nanopore long-read metagenomic analysis.
☆52Updated last month
Alternatives and similar repositories for EasyNanoMeta
Users that are interested in EasyNanoMeta are comparing it to the libraries listed below
Sorting:
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆85Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆72Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 4 months ago
- ☆62Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆70Updated 10 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- code repo for mobileOG-db☆43Updated 2 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆33Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆101Updated last month
- ☆65Updated last year
- ☆53Updated 5 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- Prediction of prophages from bacterial genomes☆80Updated 7 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆142Updated 2 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 8 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 9 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago