Alternatives and similar repositories for EasyAmplicon:

Users that are interested in EasyAmplicon are comparing it to the libraries listed below

• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆404Updated last month
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆312Updated last year
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆449Updated last month
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆276Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆342Updated 2 weeks ago
• YongxinLiu / Note
  ☆124Updated 3 years ago
• YongxinLiu / EasyMicrobiome
  ☆105Updated 3 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆168Updated 3 months ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆104Updated this week
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆399Updated last week
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆219Updated this week
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆416Updated last year
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆273Updated 5 months ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆185Updated 4 months ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆94Updated 3 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆125Updated last month
• emblab-westlake / MbioAssy
  ☆14Updated last month
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆442Updated 3 months ago
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆328Updated this week
• fjossandon / Tax4Fun2
  ☆13Updated 2 years ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆123Updated 10 months ago
• SegataLab / lefse
  ☆85Updated 10 months ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆122Updated last week
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆195Updated last week
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆330Updated last year
• benjjneb / dada2
  Accurate sample inference from amplicon data with single nucleotide resolution
  ☆487Updated last month
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆597Updated 10 months ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆168Updated 3 months ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆189Updated 7 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆362Updated 6 months ago