Alternatives and similar repositories for EasyAmplicon

Users that are interested in EasyAmplicon are comparing it to the libraries listed below

• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆436Updated 3 months ago
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆327Updated 2 years ago
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆467Updated 3 months ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆283Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆354Updated last month
• YongxinLiu / EasyMicrobiome
  ☆109Updated 6 months ago
• YongxinLiu / Note
  ☆124Updated 3 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆170Updated 3 weeks ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆114Updated 2 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆424Updated last year
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆232Updated this week
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆416Updated this week
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆276Updated this week
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆446Updated 5 months ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆135Updated last week
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆188Updated last month
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆341Updated this week
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆199Updated 9 months ago
• emblab-westlake / MbioAssy
  ☆14Updated 3 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆340Updated last year
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆124Updated last week
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆205Updated last week
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆371Updated 9 months ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆144Updated last year
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆312Updated last year
• fjossandon / Tax4Fun2
  ☆15Updated 2 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆289Updated 8 months ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆124Updated last year
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆171Updated 5 months ago