Alternatives and similar repositories for EasyAmplicon

Users that are interested in EasyAmplicon are comparing it to the libraries listed below

• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆335Updated 2 years ago
• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆463Updated last month
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆289Updated 2 years ago
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆497Updated last month
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆367Updated 4 months ago
• YongxinLiu / EasyMicrobiome
  ☆118Updated last month
• YongxinLiu / Note
  ☆125Updated 3 years ago
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆285Updated 2 months ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆99Updated 4 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆424Updated last week
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆453Updated 8 months ago
• emblab-westlake / MbioAssy
  ☆14Updated 2 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆438Updated 2 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆123Updated 5 months ago
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆361Updated 2 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆172Updated last week
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆154Updated this week
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆208Updated last year
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆191Updated last month
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆388Updated last year
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆148Updated last year
• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆341Updated 6 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆350Updated 3 weeks ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆431Updated 3 months ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆274Updated last week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆313Updated 2 years ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆13Updated 5 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆268Updated 8 months ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆244Updated last week