Easy Amplicon data analysis pipeline
☆364Apr 20, 2026Updated last month
Alternatives and similar repositories for EasyAmplicon
Users that are interested in EasyAmplicon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Easy Metagenome Pipeline☆551Feb 3, 2026Updated 3 months ago
- ☆152Dec 30, 2025Updated 5 months ago
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 10 months ago
- Microbial ecological network visualization clustering☆149Nov 20, 2025Updated 6 months ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆300Jul 29, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Statistics and visualization for amplicon data☆74May 21, 2026Updated last week
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- Using R language in microbiome analysis☆355May 10, 2023Updated 3 years ago
- Metagenome analysis pipeline☆102Jul 26, 2021Updated 4 years ago
- ☆29Jan 16, 2024Updated 2 years ago
- An R package for downstream data analysis of microbiome omics data☆279Updated this week
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- A companion R package for the MicrobiomeAnalyst web server☆132May 22, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated 2 weeks ago
- Code, unit tests, and tutorials for running PICRUSt2☆388Nov 27, 2025Updated 6 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128May 18, 2026Updated last week
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆406May 22, 2026Updated last week
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆46Jun 25, 2020Updated 5 years ago
- A comprehensive R package for deep mining microbiome☆194Apr 29, 2026Updated last month
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆244May 12, 2026Updated 2 weeks ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package for microbiome biomarker discovery☆198Feb 19, 2025Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆134Apr 22, 2026Updated last month
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆150Dec 17, 2025Updated 5 months ago
- ☆89May 22, 2024Updated 2 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆58Nov 26, 2025Updated 6 months ago
- microbiome R package☆316May 12, 2026Updated 2 weeks ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173May 21, 2026Updated last week
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆29Jul 21, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- ☆14May 7, 2022Updated 4 years ago
- Versatile open-source tool for microbiome analysis☆748May 4, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- ☆125Oct 12, 2021Updated 4 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year