Alternatives and similar repositories for Culturome

Users that are interested in Culturome are comparing it to the libraries listed below

• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆32Updated 6 years ago
• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆31Updated 6 months ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 4 months ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆33Updated 4 years ago
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆27Updated last month
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆28Updated 3 years ago
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• zhouyunyan / PIGC
  The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
  ☆27Updated 2 years ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆38Updated 2 years ago
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆60Updated 4 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• TillBirkner / metadeconfoundR
  ☆18Updated 3 months ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆37Updated 3 weeks ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆44Updated 3 years ago
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• caozhichongchong / arg_ranker
  ☆28Updated last year
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆41Updated last week
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆30Updated 2 years ago
• LorMeBioAI / MBPD
  ☆16Updated 5 months ago
• allind / EukDetect
  ☆50Updated last year
• YongxinLiu / Amplicon2022
  High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis
  ☆15Updated 2 years ago
• joshuakirsch / pseudoR
  ☆16Updated 6 months ago
• taowenmicro / Wen-etal-200214-paper-code
  ☆8Updated 5 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆58Updated 3 weeks ago
• segalab / SGVFinder
  ☆32Updated last year