Alternatives and similar repositories for Culturome

Users that are interested in Culturome are comparing it to the libraries listed below

• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆39Updated 2 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆33Updated 5 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 5 months ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆46Updated 2 years ago
• zjshi / snv_analysis_almeida2019
  ☆21Updated 5 years ago
• rdpstaff / fungene_pipeline
  Scripts and resources for analyzing sequence data for select eco-functional genes
  ☆20Updated 8 years ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆31Updated 6 years ago
• caozhichongchong / arg_ranker
  ☆35Updated 2 weeks ago
• segalab / SGVFinder
  ☆32Updated 2 years ago
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆49Updated this week
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆42Updated 5 years ago
• cafferychen777 / MicrobiomeStat
  Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
  ☆47Updated this week
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆62Updated 2 years ago
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 5 years ago
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆29Updated 3 years ago
• qichao1984 / NCyc
  ☆50Updated 4 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆46Updated 3 years ago
• waldronlab / lefser
  R implementation of the LEfSe method
  ☆61Updated this week
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆43Updated 5 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆45Updated 5 years ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆19Updated 5 years ago
• joshuakirsch / pseudoR
  ☆17Updated last year
• caporaso-lab / sourcetracker2
  SourceTracker2
  ☆80Updated last year
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆106Updated 5 years ago
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆48Updated 5 months ago
• CJ-Chen / TBtools-Manual
  ☆38Updated 5 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆72Updated 2 years ago
• alipirani88 / Comparative_Genomics
  Micro 612 genomics workshop
  ☆38Updated 4 years ago
• guoyanzhao / VirusSeeker-Virome
  VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…
  ☆17Updated 8 years ago