YongxinLiu / CulturomeLinks
☆27Updated last year
Alternatives and similar repositories for Culturome
Users that are interested in Culturome are comparing it to the libraries listed below
Sorting:
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 6 years ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 8 months ago
- ☆30Updated 3 weeks ago
- ☆49Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆27Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Statistics and visualization for amplicon data☆70Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆38Updated last month
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- ☆52Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆16Updated last month
- code repo for mobileOG-db☆39Updated 3 weeks ago
- Transform files to the microtable object with microeco package☆27Updated 2 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆54Updated 3 months ago
- ☆54Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆59Updated 2 years ago
- ☆12Updated 3 years ago
- ☆18Updated last week
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 7 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆37Updated last week
- phyloseq R☆12Updated 5 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆37Updated 3 weeks ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- ☆17Updated 7 months ago