YongxinLiu / Culturome
☆23Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for Culturome
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- ☆21Updated 4 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last month
- ☆14Updated 2 weeks ago
- A microbiome analysis toolkit for R☆21Updated last year
- ☆49Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Tranform files to the microtable object in microeco package☆22Updated this week
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated last year
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- ☆15Updated 2 weeks ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆19Updated 7 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆29Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆47Updated 2 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆30Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last month
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- ☆27Updated 10 months ago
- The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.☆25Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆39Updated 3 years ago
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆31Updated 3 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated last month
- ☆48Updated 8 months ago