Metagenome analysis pipeline
☆102Jul 26, 2021Updated 4 years ago
Alternatives and similar repositories for Metagenome
Users that are interested in Metagenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- Easy Metagenome Pipeline☆543Feb 3, 2026Updated 3 months ago
- Interpretation and visualization of microbiome charts☆544Jul 22, 2025Updated 9 months ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆301Jul 29, 2023Updated 2 years ago
- Easy Amplicon data analysis pipeline☆360Apr 20, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆125Oct 12, 2021Updated 4 years ago
- Data and scripts for amplicon pipeline☆27Mar 10, 2019Updated 7 years ago
- ☆151Dec 30, 2025Updated 4 months ago
- ☆18Nov 19, 2022Updated 3 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated last year
- Code, unit tests, and tutorials for running PICRUSt2☆386Nov 27, 2025Updated 5 months ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Mar 29, 2019Updated 7 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆468Jul 28, 2023Updated 2 years ago
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆243Jan 20, 2026Updated 3 months ago
- Course material for the metagenomics course☆47Mar 2, 2022Updated 4 years ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- ☆37Nov 5, 2025Updated 6 months ago
- 微生信生物☆24Mar 17, 2025Updated last year
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- code repo for mobileOG-db☆46Nov 6, 2025Updated 6 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆89May 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Statistical analysis for sparse high-throughput sequencing☆72Dec 17, 2024Updated last year
- Using R language in microbiome analysis☆354May 10, 2023Updated 2 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17Updated this week
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆45Jun 25, 2020Updated 5 years ago
- 病原微生物高通量测序数据分析笔记☆30Apr 17, 2019Updated 7 years ago
- Microbial ecological network visualization clustering☆148Nov 20, 2025Updated 5 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SourceTracker2☆86Jul 10, 2024Updated last year
- bioBakery tools for meta'omic profiling☆313Jun 3, 2025Updated 11 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆40Apr 12, 2026Updated 3 weeks ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 9 years ago
- DAS Tool☆173May 2, 2024Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆896Updated this week