YongxinLiu / MetagenomeLinks
Metagenome analysis pipeline
☆100Updated 4 years ago
Alternatives and similar repositories for Metagenome
Users that are interested in Metagenome are comparing it to the libraries listed below
Sorting:
- ☆144Updated last week
- ☆125Updated 4 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- phyloseq R☆12Updated 6 years ago
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- ☆87Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆174Updated this week
- Microbial ecological network visualization clustering☆139Updated last month
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆179Updated 2 months ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Updated 2 months ago
- ☆17Updated 6 months ago
- Microbiome Protocol eBook related documents and scripts.☆49Updated 4 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Updated last year
- Course material for the metagenomics course☆47Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- Pathogen NGS Documentary☆154Updated last year
- Statistics and visualization for amplicon data☆72Updated 2 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆231Updated last month
- Rapid and scalable correlation estimation for compositional data☆96Updated last year
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆44Updated 5 years ago
- iMeta teaches you to plot☆55Updated 2 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆141Updated 3 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆130Updated last week
- Fast expectation maximization for microbial source tracking☆136Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆167Updated 4 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆286Updated 4 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago