Metagenome analysis pipeline
☆102Jul 26, 2021Updated 4 years ago
Alternatives and similar repositories for Metagenome
Users that are interested in Metagenome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 5 years ago
- Easy Metagenome Pipeline☆557Updated this week
- Interpretation and visualization of microbiome charts☆547Jul 22, 2025Updated 10 months ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆299Jul 29, 2023Updated 2 years ago
- Easy Amplicon data analysis pipeline☆365Apr 20, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆126Oct 12, 2021Updated 4 years ago
- Data and scripts for amplicon pipeline☆27Mar 10, 2019Updated 7 years ago
- ☆152Dec 30, 2025Updated 5 months ago
- ☆18Nov 19, 2022Updated 3 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated last year
- Code, unit tests, and tutorials for running PICRUSt2☆389Nov 27, 2025Updated 6 months ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Mar 29, 2019Updated 7 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆246Jun 11, 2026Updated last week
- Course material for the metagenomics course☆47Mar 2, 2022Updated 4 years ago
- A companion R package for the MicrobiomeAnalyst web server☆133Jun 1, 2026Updated 2 weeks ago
- ☆37Nov 5, 2025Updated 7 months ago
- 微生信生物☆24Mar 17, 2025Updated last year
- R package for microbiome biomarker discovery☆200Feb 19, 2025Updated last year
- code repo for mobileOG-db☆49Nov 6, 2025Updated 7 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆89May 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Statistical analysis for sparse high-throughput sequencing☆74Dec 17, 2024Updated last year
- Using R language in microbiome analysis☆358May 10, 2023Updated 3 years ago
- R package for fetching and parsing data of the Human Microbiome Compendium☆17May 6, 2026Updated last month
- Scripts for stat and plot figures in rice microbiome paper☆30Oct 18, 2024Updated last year
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆46Jun 25, 2020Updated 5 years ago
- 病原微生物高通量测序数据分析笔记☆30Apr 17, 2019Updated 7 years ago
- Microbial ecological network visualization clustering☆150Nov 20, 2025Updated 6 months ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SourceTracker2☆89Jul 10, 2024Updated last year
- bioBakery tools for meta'omic profiling☆317Jun 3, 2025Updated last year
- Ying's tools for analysis, with particular focus on microbiome data☆40May 20, 2026Updated 3 weeks ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 10 years ago
- DAS Tool☆174May 2, 2024Updated 2 years ago
- 16s Qiime2 pipeline☆17Sep 26, 2018Updated 7 years ago