biobakery / biobakery_workflowsLinks
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
☆130Updated 3 months ago
Alternatives and similar repositories for biobakery_workflows
Users that are interested in biobakery_workflows are comparing it to the libraries listed below
Sorting:
- ☆87Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated last month
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆123Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆142Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆167Updated last month
- A user-friendly workflow for phylogenomics☆225Updated this week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆231Updated last week
- Statistical Analysis of Metagenomic Profiles☆94Updated last week
- Bioinformatics program inStrain☆181Updated 8 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Updated 4 months ago
- A companion R package for the MicrobiomeAnalyst web server☆131Updated last week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆176Updated last week
- Metagenome analysis pipeline☆100Updated 4 years ago
- Pan-genome wide association studies☆205Updated last year
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆118Updated 2 months ago
- Convert various sequence formats to FASTA☆146Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- Metagenomic classification of long-read sequencing data☆99Updated last week
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 7 months ago
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- Course material for the metagenomics course☆47Updated 3 years ago
- Rapid and scalable correlation estimation for compositional data☆97Updated last year
- Making whole bacterial genome sequencing data analysis easy☆114Updated 9 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago