biobakery / biobakery_workflowsLinks
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
☆127Updated last month
Alternatives and similar repositories for biobakery_workflows
Users that are interested in biobakery_workflows are comparing it to the libraries listed below
Sorting:
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆151Updated last year
- ☆86Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆136Updated last month
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆88Updated 5 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆162Updated last week
- A user-friendly workflow for phylogenomics☆222Updated 2 weeks ago
- Course material for the metagenomics course☆46Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆96Updated 2 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆171Updated 2 weeks ago
- Pan-genome wide association studies☆205Updated last year
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆225Updated last week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last week
- A robust, extensible metagenomics pipeline☆174Updated last week
- Metagenome analysis pipeline☆99Updated 4 years ago
- Bioinformatics program inStrain☆180Updated 7 months ago
- Bioinformatics Tools☆89Updated 2 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆128Updated 3 weeks ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 2 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated 11 months ago