biobakery / biobakery_workflowsLinks
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
☆129Updated 2 months ago
Alternatives and similar repositories for biobakery_workflows
Users that are interested in biobakery_workflows are comparing it to the libraries listed below
Sorting:
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆151Updated last week
- ☆86Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆138Updated this week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆88Updated 5 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆173Updated this week
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆163Updated last week
- A user-friendly workflow for phylogenomics☆223Updated last week
- Statistical Analysis of Metagenomic Profiles☆94Updated 5 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆166Updated 3 months ago
- Metagenome analysis pipeline☆100Updated 4 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 9 months ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Bioinformatics program inStrain☆180Updated 7 months ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆228Updated 3 weeks ago
- Course material for the metagenomics course☆47Updated 3 years ago
- Metagenomic classification of long-read sequencing data☆97Updated 3 weeks ago
- Pan-genome wide association studies☆205Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆60Updated last year
- ☆138Updated last week
- Making whole bacterial genome sequencing data analysis easy☆115Updated 8 months ago
- A robust, extensible metagenomics pipeline☆174Updated last week
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated 3 weeks ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 6 months ago
- Convert various sequence formats to FASTA☆140Updated last week