biobakery / biobakery_workflowsLinks
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
☆125Updated 3 weeks ago
Alternatives and similar repositories for biobakery_workflows
Users that are interested in biobakery_workflows are comparing it to the libraries listed below
Sorting:
- ☆85Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆150Updated last year
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆133Updated last week
- A user-friendly workflow for phylogenomics☆221Updated 3 weeks ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆161Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Course material for the metagenomics course☆46Updated 3 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- Bioinformatics program inStrain☆178Updated 6 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- A robust, extensible metagenomics pipeline☆173Updated this week
- Metagenomic classification of long-read sequencing data☆95Updated 2 weeks ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆168Updated this week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆219Updated 3 weeks ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated last week
- Pan-genome wide association studies☆205Updated last year
- Convert various sequence formats to FASTA☆139Updated 3 years ago
- Fast expectation maximization for microbial source tracking☆133Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 6 months ago