☆35Nov 5, 2025Updated 4 months ago
Alternatives and similar repositories for arg_ranker
Users that are interested in arg_ranker are comparing it to the libraries listed below
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Mar 16, 2025Updated 11 months ago
- MetaCompare☆19Mar 3, 2024Updated 2 years ago
- ☆10Mar 29, 2025Updated 11 months ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- code repo for mobileOG-db☆46Nov 6, 2025Updated 4 months ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 4 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 3 years ago
- ☆19Dec 4, 2025Updated 3 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 3 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Mar 25, 2023Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 3 weeks ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- Pan-genome Analysis☆12May 4, 2025Updated 10 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 2 years ago
- Metagenomic Analysis in Real Time☆29Feb 25, 2026Updated last week
- MAGinator - Accurate SNV calling and profiling of MAGs☆26May 21, 2025Updated 9 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆27Jul 22, 2024Updated last year
- ☆16Mar 3, 2023Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- ☆23May 8, 2023Updated 2 years ago
- ☆57Updated this week
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated 6 months ago
- ☆32Apr 15, 2024Updated last year
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated last month
- This is the source code for ARGs-OAP v2.0 construction☆12Aug 1, 2019Updated 6 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆125Oct 30, 2023Updated 2 years ago
- Using R language in microbiome analysis☆349May 10, 2023Updated 2 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆14Nov 24, 2025Updated 3 months ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Apr 29, 2022Updated 3 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16May 26, 2025Updated 9 months ago