☆37Nov 5, 2025Updated 8 months ago
Alternatives and similar repositories for arg_ranker
Users that are interested in arg_ranker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆73Mar 16, 2025Updated last year
- MetaCompare☆20Mar 3, 2024Updated 2 years ago
- ☆14Apr 3, 2025Updated last year
- code repo for mobileOG-db☆49Nov 6, 2025Updated 8 months ago
- ☆11Mar 29, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Nov 9, 2025Updated 8 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆23Apr 13, 2026Updated 2 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- Processing support for Greengenes2☆15Jul 31, 2023Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆53Aug 16, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pan-genome Analysis☆12May 4, 2025Updated last year
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 7 months ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Jan 24, 2025Updated last year
- Using R language in microbiome analysis☆359May 10, 2023Updated 3 years ago
- Metagenome analysis pipeline☆102Jul 26, 2021Updated 4 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 7 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 3 months ago
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20Mar 29, 2022Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆37Feb 26, 2023Updated 3 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆50Apr 20, 2023Updated 3 years ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 6 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆26Mar 25, 2023Updated 3 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆91May 7, 2025Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆424May 20, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 2 weeks ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 4 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆232Apr 1, 2026Updated 3 months ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Metagenomic Analysis in Real Time☆31Updated this week
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago