caozhichongchong / arg_rankerLinks
☆35Updated last month
Alternatives and similar repositories for arg_ranker
Users that are interested in arg_ranker are comparing it to the libraries listed below
Sorting:
- code repo for mobileOG-db☆41Updated last month
- ☆61Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆66Updated 8 months ago
- ☆54Updated 5 months ago
- ☆51Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆64Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- ☆31Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 3 years ago
- ☆63Updated last year
- Binning Virus Genomes from Metagenomes☆67Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆51Updated 2 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆44Updated last week
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 11 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- This is the source code for ARGs-OAP v2.0 construction☆12Updated 6 years ago
- MetaCompare☆19Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆19Updated 5 years ago
- ☆20Updated last year