microbiota / amplicon
Statistics and visualization for amplicon data
☆70Updated last year
Alternatives and similar repositories for amplicon:
Users that are interested in amplicon are comparing it to the libraries listed below
- Microbial ecological network visualization clustering☆103Updated this week
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆46Updated 3 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆120Updated 3 weeks ago
- Scripts for stat and plot figures in rice microbiome paper☆31Updated 4 months ago
- phyloseq R☆11Updated 5 years ago
- Data and scripts for amplicon pipeline☆25Updated 5 years ago
- ☆100Updated 2 months ago
- ☆11Updated 5 years ago
- ☆71Updated last year
- ☆83Updated 8 months ago
- ☆14Updated last year
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆32Updated 5 years ago
- Metagenome analysis pipeline☆94Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- EasyStat☆17Updated 3 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆73Updated 2 weeks ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- ☆26Updated last year
- ☆14Updated 10 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆97Updated 4 years ago
- R implementation of the LEfSe method☆55Updated this week
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- ☆49Updated 4 years ago
- ☆12Updated 2 years ago
- Integrated Network Analysis Pipeline☆15Updated 2 months ago
- Microbiome Protocol eBook related documents and scripts.☆47Updated 3 years ago
- This is an R package for element cycle analysis using metagenomic data.☆36Updated 2 months ago
- ☆55Updated 11 months ago
- ☆13Updated 3 years ago