Alternatives and similar repositories for MicrobiomeProtocol

Users that are interested in MicrobiomeProtocol are comparing it to the libraries listed below

• YongxinLiu / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆30Updated 11 months ago
• Tong-Chen / s-plot
  A simple plot library
  ☆52Updated 8 years ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆59Updated 4 months ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆31Updated 6 years ago
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆54Updated 2 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆99Updated 4 years ago
• YongxinLiu / UsearchChineseManual
  USEARCH中文帮助文档(USEARCH Chinese manual)
  ☆25Updated last year
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• ththi / Microbial-Interkingdom-Suppl
  Scripts and data for Duran & Thiergart et al. Cell, 2018
  ☆24Updated 6 years ago
• SegataLab / lefse
  ☆84Updated last year
• alexa-kur / miQTL_cookbook
  ☆46Updated 5 years ago
• YongxinLiu / Note
  ☆126Updated 3 years ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆44Updated 3 years ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆71Updated 2 years ago
• shenmengyuan / RNA_seq_Biotrainee
  DEG analysis and KEGG/GO enrichment analysis
  ☆69Updated 7 years ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• YongxinLiu / EasyMicrobiome
  ☆121Updated 2 months ago
• YongxinLiu / Culturome
  ☆28Updated last year
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆106Updated 5 years ago
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆174Updated 2 weeks ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆57Updated last year
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆115Updated last year
• karkman / crAssphage_project
  Source code for the crAssphage project
  ☆50Updated 6 years ago
• CJ-Chen / TBtools-Manual
  ☆38Updated 5 years ago
• ZihaoShu / Tax4Fun2
  This is an unofficial repo for Tax4Fun2
  ☆26Updated 3 years ago
• borenstein-lab / mimosa2
  ☆13Updated 9 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆120Updated last year
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago