Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequencing data
☆128May 18, 2026Updated last week
Alternatives and similar repositories for BASALT
Users that are interested in BASALT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆64Feb 27, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- ☆77Mar 10, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆162Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆84Sep 8, 2025Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆90Dec 27, 2024Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 11 months ago
- ☆26Jun 20, 2023Updated 2 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆50Feb 5, 2026Updated 3 months ago
- ☆16Jan 12, 2026Updated 4 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated last month
- DAS Tool☆173May 2, 2024Updated 2 years ago
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆304Feb 3, 2026Updated 3 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated 2 months ago
- Variational autoencoder for metagenomic binning☆327Apr 27, 2026Updated last month
- Rapid comparison and dereplication of genomes☆341Nov 10, 2025Updated 6 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆188May 18, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆230Apr 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆23May 14, 2023Updated 3 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆471Jul 28, 2023Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- ☆35Apr 15, 2024Updated 2 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 4 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107May 6, 2026Updated 3 weeks ago
- The binning tool with dynamic contrastive learning and deep language model☆23Nov 14, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- code repo for mobileOG-db☆49Nov 6, 2025Updated 6 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 8 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆102Apr 27, 2026Updated last month
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆37Apr 7, 2026Updated last month
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- ☆35May 20, 2026Updated last week