An R package for downstream data analysis of microbiome omics data
☆278May 20, 2026Updated this week
Alternatives and similar repositories for microeco
Users that are interested in microeco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transform files to the microtable object with microeco package☆28Feb 13, 2026Updated 3 months ago
- A comprehensive R package for deep mining microbiome☆194Apr 29, 2026Updated 3 weeks ago
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆134Apr 27, 2026Updated 3 weeks ago
- microbiome R package☆316May 12, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Microbial ecological network visualization clustering☆149Nov 20, 2025Updated 6 months ago
- R implementation of the LEfSe method☆66May 14, 2026Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆179Dec 18, 2025Updated 5 months ago
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated 2 weeks ago
- Import qiime2 artifacts to R☆180Dec 12, 2024Updated last year
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- Code, unit tests, and tutorials for running PICRUSt2☆388Nov 27, 2025Updated 5 months ago
- Easy Amplicon data analysis pipeline☆364Apr 20, 2026Updated last month
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆374Aug 1, 2025Updated 9 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆649Feb 27, 2026Updated 2 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆244May 12, 2026Updated last week
- Orchestrating Microbiome Analysis☆109Updated this week
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated last month
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128May 18, 2026Updated last week
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Using R language in microbiome analysis☆355May 10, 2023Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆164Apr 23, 2025Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆195May 10, 2026Updated 2 weeks ago
- Read alignment statistics for metagenomics☆397Apr 8, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Updated this week
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 10 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆149Dec 17, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rapid comparison and dereplication of genomes☆341Nov 10, 2025Updated 6 months ago
- ☆152Dec 30, 2025Updated 4 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Mar 16, 2025Updated last year
- ☆27Jan 30, 2025Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Mar 18, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆303Feb 3, 2026Updated 3 months ago