ChiLiubio / microecoLinks
An R package for data analysis in microbial community ecology
☆252Updated this week
Alternatives and similar repositories for microeco
Users that are interested in microeco are comparing it to the libraries listed below
Sorting:
- R package for microbiome biomarker discovery☆190Updated 8 months ago
- Microbial ecological network visualization clustering☆127Updated 7 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆164Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆171Updated 7 months ago
- A comprehensive R package for deep mining microbiome☆190Updated last month
- Import qiime2 artifacts to R☆172Updated 10 months ago
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆126Updated last month
- microbiome R package☆309Updated 2 months ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆50Updated 3 years ago
- Statistics and visualization for amplicon data☆71Updated 2 years ago
- Data and scripts for amplicon pipeline☆26Updated 6 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆216Updated last week
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆87Updated 3 weeks ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆120Updated 2 months ago
- ☆126Updated 4 years ago
- FUNGuild: parsing OTUs into functional guilds☆120Updated last year
- Helper Functions for Interactive Tree Of Life (iTOL)☆178Updated last month
- ☆21Updated 5 years ago
- Normalized Stochasticity Ratio in community assembly☆28Updated last year
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Genome Association Predict Integrate Tools☆212Updated this week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆164Updated last month
- Orchestrating Microbiome Analysis☆104Updated 3 weeks ago
- EasyStat☆19Updated 2 months ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Using R language in microbiome analysis☆343Updated 2 years ago
- Visualize and annotate genomic coverage with ggplot2☆264Updated 9 months ago
- A companion R package for the MicrobiomeAnalyst web server☆127Updated last month
- ☆15Updated 2 years ago
- Analyzing and visualizing KEGG information using the grammar of graphics☆235Updated 2 weeks ago