Alternatives and similar repositories for EasyMicrobiomeR

Users that are interested in EasyMicrobiomeR are comparing it to the libraries listed below

• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆304Updated this week
• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆448Updated 4 months ago
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆287Updated last year
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆475Updated 4 months ago
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆361Updated 2 months ago
• YongxinLiu / Note
  ☆125Updated 3 years ago
• YongxinLiu / EasyMicrobiome
  ☆111Updated 7 months ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆232Updated last week
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆120Updated 3 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆171Updated last month
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆138Updated last week
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆281Updated 3 weeks ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆426Updated last year
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆417Updated last week
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 months ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆125Updated this week
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆431Updated 8 years ago
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆448Updated 6 months ago
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆346Updated last week
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆172Updated 6 months ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆202Updated 10 months ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆207Updated last week
• hbctraining / DGE_workshop
  ☆392Updated 3 years ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆185Updated 4 months ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆306Updated this week
• wilkox / gggenes
  ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
  ☆551Updated last month
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆343Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆625Updated last week
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆326Updated 6 years ago