Using R language in microbiome analysis
☆358May 10, 2023Updated 3 years ago
Alternatives and similar repositories for EasyMicrobiomeR
Users that are interested in EasyMicrobiomeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆152Dec 30, 2025Updated 5 months ago
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 10 months ago
- Easy Amplicon data analysis pipeline☆365Apr 20, 2026Updated last month
- Microbial ecological network visualization clustering☆150Nov 20, 2025Updated 6 months ago
- phyloseq R☆12Sep 18, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- Easy Metagenome Pipeline☆554Feb 3, 2026Updated 4 months ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆280Updated this week
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 3 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆133Jun 1, 2026Updated 2 weeks ago
- ☆37Nov 5, 2025Updated 7 months ago
- microbiome R package☆317May 12, 2026Updated last month
- A comprehensive R package for deep mining microbiome☆196Apr 29, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- iMeta teaches you to plot☆58Apr 26, 2023Updated 3 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆389Nov 27, 2025Updated 6 months ago
- 微生信生物☆24Mar 17, 2025Updated last year
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆299Jul 29, 2023Updated 2 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated last year
- Metagenome analysis pipeline☆102Jul 26, 2021Updated 4 years ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆105Dec 17, 2025Updated 5 months ago
- Import qiime2 artifacts to R☆182Dec 12, 2024Updated last year
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Metagenomic sequence data analysis pipeline☆36Sep 5, 2025Updated 9 months ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆46Jun 25, 2020Updated 5 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆129May 28, 2026Updated 2 weeks ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 3 months ago
- MicrobiomeReview☆11Jun 6, 2023Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆90Dec 27, 2024Updated last year
- ☆22Nov 13, 2019Updated 6 years ago
- Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"☆53Dec 9, 2021Updated 4 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆59Nov 26, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆137Apr 22, 2026Updated last month
- ☆15Oct 7, 2025Updated 8 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆168Updated this week
- ☆64Feb 27, 2024Updated 2 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆199Jun 5, 2026Updated last week
- EasyStat☆21Jul 31, 2025Updated 10 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 10 months ago