Alternatives and similar repositories for EasyMicrobiomeR

Users that are interested in EasyMicrobiomeR are comparing it to the libraries listed below

• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆337Updated last month
• YongxinLiu / QIIME2ChineseManual
  QIIME 2中文文档(QIIME 2 Chinese Manual)
  ☆295Updated 2 years ago
• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆504Updated last week
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆376Updated last month
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆524Updated 5 months ago
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆299Updated 6 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆452Updated 2 years ago
• YongxinLiu / Note
  ☆125Updated 4 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆139Updated last month
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆440Updated 2 weeks ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆172Updated this week
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆387Updated 2 weeks ago
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆455Updated last year
• YongxinLiu / EasyMicrobiome
  ☆140Updated last week
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆179Updated last month
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆100Updated 4 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆229Updated last month
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated last month
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆286Updated 4 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆361Updated 5 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆399Updated 6 months ago
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆230Updated 2 weeks ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆452Updated 7 months ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆394Updated 2 years ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆258Updated this week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆301Updated 3 months ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆152Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆682Updated 6 months ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆26Updated 6 years ago