qichao1984 / NCyc
☆48Updated 4 years ago
Alternatives and similar repositories for NCyc:
Users that are interested in NCyc are comparing it to the libraries listed below
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- MetaCompare☆17Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆53Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- ☆28Updated last year
- code repo for mobileOG-db☆35Updated 2 months ago
- ☆50Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆59Updated 3 years ago
- MicrobiomeReview☆11Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆29Updated 7 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆67Updated 8 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆44Updated 5 months ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆13Updated 9 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 8 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆56Updated 3 years ago
- A pipeline for nanopore long-read metagenomic analysis.☆33Updated 4 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆31Updated 2 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated last year
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 8 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆65Updated 4 years ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆65Updated last year
- Reorients assembled microbial sequences☆116Updated 2 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆71Updated 3 months ago