Alternatives and similar repositories for EasyMicrobiome

Users that are interested in EasyMicrobiome are comparing it to the libraries listed below

• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆100Updated 4 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆180Updated 2 months ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• YongxinLiu / Note
  ☆125Updated 4 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆177Updated last week
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆130Updated 2 months ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆140Updated last month
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆44Updated 5 years ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆107Updated 5 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆231Updated last month
• SegataLab / lefse
  ☆87Updated last year
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆142Updated last month
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆154Updated last year
• emblab-westlake / MbioAssy
  ☆17Updated 6 months ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆90Updated 6 months ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆130Updated this week
• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆339Updated last month
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆55Updated 2 years ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆223Updated 2 months ago
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆72Updated 2 years ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 months ago
• EMBL-PKU / BASALT
  Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…
  ☆127Updated this week
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆288Updated 5 months ago
• YongxinLiu / UsearchChineseManual
  USEARCH中文帮助文档(USEARCH Chinese manual)
  ☆23Updated last year
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆347Updated 2 years ago
• YongxinLiu / MicrobiomeProtocol
  Microbiome Protocol eBook related documents and scripts.
  ☆49Updated 4 years ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆152Updated last month
• Tong-Chen / s-plot
  A simple plot library
  ☆52Updated 8 years ago
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆94Updated 5 years ago