☆151Dec 30, 2025Updated 4 months ago
Alternatives and similar repositories for EasyMicrobiome
Users that are interested in EasyMicrobiome are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Easy Amplicon data analysis pipeline☆360Apr 20, 2026Updated 2 weeks ago
- Easy Metagenome Pipeline☆543Feb 3, 2026Updated 3 months ago
- Using R language in microbiome analysis☆354May 10, 2023Updated 2 years ago
- Interpretation and visualization of microbiome charts☆544Jul 22, 2025Updated 9 months ago
- Microbial ecological network visualization clustering☆148Nov 20, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated last year
- Metagenome analysis pipeline☆102Jul 26, 2021Updated 4 years ago
- QIIME 2中文文档(QIIME 2 Chinese Manual)☆301Jul 29, 2023Updated 2 years ago
- 微生信生物☆24Mar 17, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆277Updated this week
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆133Apr 22, 2026Updated 2 weeks ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Open-source usearch☆134Aug 19, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Feb 22, 2024Updated 2 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- ☆16Jan 12, 2026Updated 3 months ago
- ☆97May 1, 2026Updated last week
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Apr 19, 2026Updated 2 weeks ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆147Dec 17, 2025Updated 4 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- ☆35Apr 15, 2024Updated 2 years ago
- Resources for phage genomics and annotation☆10Oct 27, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A comprehensive R package for deep mining microbiome☆192Apr 29, 2026Updated last week
- ☆89May 22, 2024Updated last year
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- Pathogen NGS Documentary☆155Jan 26, 2026Updated 3 months ago
- ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex …☆107May 2, 2026Updated last week
- Integrated Network Analysis Pipeline☆19Dec 19, 2024Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆243Jan 20, 2026Updated 3 months ago
- Local version of the virus identification and analysis web server (tool set)☆109Apr 12, 2026Updated 3 weeks ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DAS Tool☆173May 2, 2024Updated 2 years ago
- http://huttenhower.sph.harvard.edu/waafle☆24Feb 26, 2026Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- Code, unit tests, and tutorials for running PICRUSt2☆386Nov 27, 2025Updated 5 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 2 months ago