Alternatives and similar repositories for EasyMicrobiome

Users that are interested in EasyMicrobiome are comparing it to the libraries listed below

• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆99Updated 4 years ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆174Updated 2 weeks ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆127Updated 6 months ago
• emblab-westlake / MbioAssy
  ☆15Updated 3 months ago
• YongxinLiu / Note
  ☆126Updated 3 years ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆106Updated 5 years ago
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆159Updated last week
• SegataLab / lefse
  ☆84Updated last year
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆118Updated 4 months ago
• YongxinLiu / UsearchChineseManual
  USEARCH中文帮助文档(USEARCH Chinese manual)
  ☆25Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆151Updated last year
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆71Updated 2 years ago
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆132Updated 2 weeks ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆31Updated 6 years ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆216Updated last month
• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆321Updated 3 weeks ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆83Updated 2 months ago
• YongxinLiu / MicrobiomeProtocol
  Microbiome Protocol eBook related documents and scripts.
  ☆49Updated 4 years ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆54Updated 2 years ago
• donovan-h-parks / STAMP
  Statistical Analysis of Metagenomic Profiles
  ☆93Updated 5 years ago
• Tong-Chen / s-plot
  A simple plot library
  ☆52Updated 8 years ago
• taowenmicro / EasyStat
  EasyStat
  ☆19Updated 2 months ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆44Updated 3 years ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated 2 weeks ago
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆50Updated 3 years ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆147Updated 10 months ago