A comprehensive R package for deep mining microbiome
☆194Apr 29, 2026Updated 3 weeks ago
Alternatives and similar repositories for MicrobiotaProcess
Users that are interested in MicrobiotaProcess are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for microbiome biomarker discovery☆197Feb 19, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆278May 13, 2026Updated last week
- R implementation of the LEfSe method☆66Updated this week
- microbiome R package☆316May 12, 2026Updated last week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆127May 4, 2026Updated 2 weeks ago
- A shiny package for microbiome functional enrichment analysis☆41Apr 29, 2026Updated 3 weeks ago
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 9 months ago
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated last week
- Ying's tools for analysis, with particular focus on microbiome data☆40May 5, 2026Updated 2 weeks ago
- Code, unit tests, and tutorials for running PICRUSt2☆387Nov 27, 2025Updated 5 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Network construction, analysis, and comparison for microbial compositional data☆179Dec 18, 2025Updated 5 months ago
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Microbial ecological network visualization clustering☆149Nov 20, 2025Updated 6 months ago
- Orchestrating Microbiome Analysis☆108May 7, 2026Updated last week
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆170Sep 4, 2025Updated 8 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆649Feb 27, 2026Updated 2 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆231Apr 29, 2026Updated 3 weeks ago
- Statistics and visualization for amplicon data☆74Apr 25, 2023Updated 3 years ago
- Import qiime2 artifacts to R☆179Dec 12, 2024Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- A companion R package for the MicrobiomeAnalyst web server☆132Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆374Aug 1, 2025Updated 9 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆194May 10, 2026Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆405Nov 28, 2025Updated 5 months ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆97Apr 29, 2026Updated 3 weeks ago
- Statistical analysis for sparse high-throughput sequencing☆73Dec 17, 2024Updated last year
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated last year
- ☆43Jul 31, 2017Updated 8 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆126May 12, 2024Updated 2 years ago
- Using R language in microbiome analysis☆355May 10, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆134Apr 22, 2026Updated 3 weeks ago
- ☆18Nov 19, 2022Updated 3 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆262May 13, 2026Updated last week
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆460Feb 13, 2026Updated 3 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆173Mar 13, 2026Updated 2 months ago