Alternatives and similar repositories for MicrobiotaProcess

Users that are interested in MicrobiotaProcess are comparing it to the libraries listed below

• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆135Updated last week
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆124Updated last week
• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆114Updated 2 months ago
• jbisanz / qiime2R
  Import qiime2 artifacts to R
  ☆171Updated 5 months ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆139Updated 6 months ago
• yiluheihei / microbiomeMarker
  R package for microbiome biomarker discovery
  ☆184Updated 3 months ago
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆170Updated 3 weeks ago
• stefpeschel / NetCoMi
  Network construction, analysis, and comparison for microbial compositional data
  ☆167Updated 2 months ago
• SegataLab / lefse
  ☆84Updated last year
• YongxinLiu / EasyMicrobiome
  ☆109Updated 6 months ago
• ChiLiubio / microeco
  An R package for data analysis in microbial community ecology
  ☆232Updated this week
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆70Updated 2 years ago
• microsud / Tools-Microbiome-Analysis
  A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
  ☆115Updated 2 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• benjjneb / decontam
  Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
  ☆157Updated 2 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆199Updated 9 months ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆124Updated last year
• YongxinLiu / Note
  ☆124Updated 3 years ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆123Updated 2 weeks ago
• david-barnett / microViz
  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
  ☆114Updated last month
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆119Updated last year
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆354Updated last month
• nf-core / ampliseq
  Amplicon sequencing analysis workflow using DADA2 and QIIME2
  ☆205Updated last week
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆120Updated 2 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆113Updated last week
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆133Updated 2 weeks ago
• noriakis / ggkegg
  Analyzing and visualizing KEGG information using the grammar of graphics
  ☆229Updated 2 months ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆103Updated 5 years ago
• picrust / picrust
  Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…
  ☆89Updated 2 years ago
• microbiome / OMA
  Orchestrating Microbiome Analysis
  ☆97Updated last week