A comprehensive R package for deep mining microbiome
☆197Apr 29, 2026Updated 6 months ago
Alternatives and similar repositories for MicrobiotaProcess
Users that are interested in MicrobiotaProcess are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆295Oct 20, 2026Updated last week
- microbiome R package☆320Updated this week
- R implementation of the LEfSe method☆68May 14, 2026Updated 5 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- Interpretation and visualization of microbiome charts☆552Jul 22, 2025Updated last year
- A shiny package for microbiome functional enrichment analysis☆42Oct 1, 2026Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆456Aug 28, 2026Updated 2 months ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆234Aug 12, 2026Updated 2 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆128Updated this week
- Orchestrating Microbiome Analysis☆112Oct 23, 2026Updated last week
- Ying's tools for analysis, with particular focus on microbiome data☆40Jul 6, 2026Updated 3 months ago
- Network construction, analysis, and comparison for microbial compositional data☆180Jul 7, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆651Feb 27, 2026Updated 8 months ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆99Jun 4, 2026Updated 4 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆399Oct 24, 2026Updated last week
- R package for Statistical Inference of Associations between Microbial Communities And host phenoType☆60Sep 3, 2026Updated last month
- Microbial ecological network visualization clustering☆156Sep 29, 2026Updated last month
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 6 years ago
- Import qiime2 artifacts to R☆185Dec 12, 2024Updated last year
- Creating composite plot using 'aplot'☆10Aug 4, 2026Updated 2 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆132Oct 20, 2026Updated last week
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 5 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆175Sep 4, 2025Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- Make Picrust2 Output Analysis and Visualization Easier☆206Updated this week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago
- Using R language in microbiome analysis☆364May 10, 2023Updated 3 years ago
- Easy Amplicon data analysis pipeline☆377Apr 20, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆52Jun 6, 2026Updated 4 months ago
- a complete reference book for treeio, tidytree and ggtree packages☆103Jul 13, 2022Updated 4 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated 2 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆481Oct 9, 2026Updated 3 weeks ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆429Oct 13, 2026Updated 2 weeks ago