A comprehensive R package for deep mining microbiome
☆191Nov 3, 2025Updated 3 months ago
Alternatives and similar repositories for MicrobiotaProcess
Users that are interested in MicrobiotaProcess are comparing it to the libraries listed below
Sorting:
- R package for microbiome biomarker discovery☆193Feb 19, 2025Updated last year
- An R package for data analysis in microbial community ecology☆269Updated this week
- microbiome R package☆311Aug 19, 2025Updated 6 months ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Feb 17, 2026Updated last week
- R implementation of the LEfSe method☆63Nov 17, 2025Updated 3 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆117Apr 11, 2023Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- A complete pipeline for metagenomic analysis☆441Jan 21, 2026Updated last month
- A shiny package for microbiome functional enrichment analysis☆38Dec 23, 2025Updated 2 months ago
- Code, unit tests, and tutorials for running PICRUSt2☆381Nov 27, 2025Updated 3 months ago
- Orchestrating Microbiome Analysis☆106Feb 16, 2026Updated last week
- Interpretation and visualization of microbiome charts☆535Jul 22, 2025Updated 7 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Jan 27, 2026Updated last month
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Sparse InversE Covariance estimation for Ecological Association and Statistical Inference☆229Oct 29, 2025Updated 4 months ago
- Network construction, analysis, and comparison for microbial compositional data☆176Dec 18, 2025Updated 2 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆169Sep 4, 2025Updated 5 months ago
- ☆43Jul 31, 2017Updated 8 years ago
- Microbial ecological network visualization clustering☆144Nov 20, 2025Updated 3 months ago
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆641Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆366Aug 1, 2025Updated 6 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆184Feb 12, 2026Updated 2 weeks ago
- Import qiime2 artifacts to R☆176Dec 12, 2024Updated last year
- Statistics and visualization for amplicon data☆73Apr 25, 2023Updated 2 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Dec 17, 2024Updated last year
- R package for downstream Microbiome analysis☆31Dec 10, 2024Updated last year
- Microbiome analysis☆54Updated this week
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆96Jan 9, 2026Updated last month
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 3 months ago
- A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.☆457Feb 13, 2026Updated 2 weeks ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆125May 12, 2024Updated last year
- Differential abundance (DA) and correlation analyses for microbial absolute abundance data☆130Sep 5, 2025Updated 5 months ago
- bioBakery tools for meta'omic profiling☆305Jun 3, 2025Updated 8 months ago
- A companion R package for the MicrobiomeAnalyst web server☆131Updated this week
- 🌈 Interactive analysis of metagenomics data☆443Sep 17, 2025Updated 5 months ago
- Using R language in microbiome analysis☆348May 10, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated last week
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago