KatariinaParnanen / MobileGeneticElementDatabaseLinks
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
☆52Updated 4 years ago
Alternatives and similar repositories for MobileGeneticElementDatabase
Users that are interested in MobileGeneticElementDatabase are comparing it to the libraries listed below
Sorting:
- code repo for mobileOG-db☆46Updated 3 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Updated last year
- ☆53Updated 5 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆71Updated 10 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆83Updated 9 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆53Updated 2 months ago
- ☆63Updated last year
- ☆56Updated last week
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆33Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A toolbox for comparative genomics.☆108Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last month
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- ☆66Updated last year
- Reorients assembled microbial sequences☆132Updated 5 months ago
- Prediction of prophages from bacterial genomes☆81Updated last week
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year