KatariinaParnanen / MobileGeneticElementDatabase
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
☆39Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for MobileGeneticElementDatabase
- ☆47Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- code repo for mobileOG-db☆32Updated 4 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆61Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆56Updated last year
- ☆27Updated 10 months ago
- MetaCompare☆17Updated 8 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆43Updated 8 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆27Updated 4 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 7 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆61Updated 3 months ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆26Updated last year
- ☆79Updated last year
- Prediction of prophages from bacterial genomes☆71Updated last year
- A toolbox for comparative genomics.☆97Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆40Updated last year
- ☆48Updated 8 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 5 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- Reorients assembled microbial sequences☆98Updated last month
- A pipeline for nanopore long-read metagenomic analysis.☆22Updated this week
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- IS mapping software☆51Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆52Updated 2 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆54Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆57Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆63Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆34Updated last year