KatariinaParnanen / MobileGeneticElementDatabase
Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
☆46Updated 3 years ago
Alternatives and similar repositories for MobileGeneticElementDatabase
Users that are interested in MobileGeneticElementDatabase are comparing it to the libraries listed below
Sorting:
- code repo for mobileOG-db☆35Updated 3 months ago
- ☆49Updated 4 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆53Updated 2 months ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- ☆28Updated last year
- MetaCompare☆17Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆71Updated 9 months ago
- Find endogenous viral elements in genomes☆13Updated 3 months ago
- A pipeline for nanopore long-read metagenomic analysis.☆37Updated 3 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- ☆50Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆71Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆57Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- Reorients assembled microbial sequences☆117Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆62Updated 4 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆65Updated last week
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Prediction of prophages from bacterial genomes☆78Updated last year
- ☆53Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆45Updated last month