Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
☆46Jun 25, 2020Updated 5 years ago
Alternatives and similar repositories for Liu2020ProteinCell
Users that are interested in Liu2020ProteinCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated last year
- EasyStat☆21Jul 31, 2025Updated 9 months ago
- Interpretation and visualization of microbiome charts☆546Jul 22, 2025Updated 10 months ago
- Easy Metagenome Pipeline☆551Feb 3, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 4 years ago
- ☆13Apr 22, 2021Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 14 years ago
- ☆29Jan 16, 2024Updated 2 years ago
- Statistics and visualization for amplicon data☆74May 21, 2026Updated last week
- Using R language in microbiome analysis☆355May 10, 2023Updated 3 years ago
- ☆125Oct 12, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Easy Amplicon data analysis pipeline☆364Apr 20, 2026Updated last month
- Metagenome analysis pipeline☆102Jul 26, 2021Updated 4 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆167Feb 13, 2026Updated 3 months ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated last month
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated 2 weeks ago
- ☆18Nov 19, 2022Updated 3 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆30Dec 31, 2020Updated 5 years ago
- ☆152Dec 30, 2025Updated 5 months ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆23Apr 13, 2026Updated last month
- Statistical analysis for sparse high-throughput sequencing☆74Dec 17, 2024Updated last year
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆27Mar 7, 2020Updated 6 years ago
- ☆14Apr 30, 2020Updated 6 years ago
- Build Annotation package by using information from KEGG, NCBI, Ensembl☆15May 4, 2023Updated 3 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 3 months ago
- ☆37Nov 5, 2025Updated 6 months ago