Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
☆47Jun 25, 2020Updated 6 years ago
Alternatives and similar repositories for Liu2020ProteinCell
Users that are interested in Liu2020ProteinCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆23Aug 1, 2024Updated 2 years ago
- EasyStat☆21Jun 11, 2026Updated 3 months ago
- Interpretation and visualization of microbiome charts☆551Jul 22, 2025Updated last year
- Easy Metagenome Pipeline☆582Jun 14, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Microbiome Protocol eBook related documents and scripts.☆49Jun 11, 2021Updated 5 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆125Oct 12, 2021Updated 4 years ago
- ☆29Jan 16, 2024Updated 2 years ago
- Perl scripts for working with the GFF format☆16Aug 24, 2011Updated 15 years ago
- Statistics and visualization for amplicon data☆74May 21, 2026Updated 3 months ago
- ☆11Feb 9, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Easy Amplicon data analysis pipeline☆375Apr 20, 2026Updated 5 months ago
- Using R language in microbiome analysis☆362May 10, 2023Updated 3 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- Metagenome analysis pipeline☆101Jul 26, 2021Updated 5 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆171Jun 10, 2026Updated 3 months ago
- MicrOSAtellite Instability Classifier☆15Apr 27, 2026Updated 4 months ago
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A complete pipeline for metagenomic analysis☆454Aug 28, 2026Updated 3 weeks ago
- ☆18Nov 19, 2022Updated 3 years ago
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- Pipeline for metabolic annotation of microbial genomes☆155Mar 20, 2025Updated last year
- Build Annotation package by using information from KEGG, NCBI, Ensembl☆16May 4, 2023Updated 3 years ago
- ☆158Dec 30, 2025Updated 8 months ago
- Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目☆26Mar 7, 2020Updated 6 years ago
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- ☆39Updated this week
- Statistical analysis for sparse high-throughput sequencing☆75Dec 17, 2024Updated last year
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 6 years ago
- ☆15Aug 21, 2026Updated 3 weeks ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆154Feb 5, 2026Updated 7 months ago
- Draw pan- and core-genome curves from proteinortho output☆14Oct 26, 2023Updated 2 years ago