YongxinLiu / Liu2020ProteinCellLinks
Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
☆43Updated 5 years ago
Alternatives and similar repositories for Liu2020ProteinCell
Users that are interested in Liu2020ProteinCell are comparing it to the libraries listed below
Sorting:
- A simple plot library☆52Updated 8 years ago
- Microbiome Protocol eBook related documents and scripts.☆49Updated 4 years ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆59Updated 6 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last week
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Updated 3 years ago
- Scripts for stat and plot figures in rice microbiome paper☆30Updated last year
- ☆46Updated 5 years ago
- ☆86Updated last year
- Course material for the metagenomics course☆46Updated 3 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- Metagenome analysis pipeline☆99Updated 4 years ago
- Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)☆31Updated 6 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- ☆58Updated last year
- Source code for the crAssphage project☆50Updated 3 weeks ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆127Updated last month
- ☆62Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆136Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆88Updated 5 months ago
- USEARCH中文帮助文档(USEARCH Chinese manual)☆24Updated last year
- web documentation for Trinotate☆48Updated 2 years ago
- ☆133Updated 2 weeks ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Scripts for stat and plot figures in rice microbiome paper☆20Updated 6 years ago
- iMeta teaches you to plot☆54Updated 2 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆95Updated last month
- This is an unofficial repo for Tax4Fun2☆26Updated 3 years ago
- ☆32Updated 2 years ago