HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
☆237Jan 20, 2026Updated 2 months ago
Alternatives and similar repositories for humann
Users that are interested in humann are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆396Mar 16, 2026Updated last week
- bioBakery tools for meta'omic profiling☆309Jun 3, 2025Updated 9 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆587Feb 21, 2026Updated last month
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆144Dec 17, 2025Updated 3 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated last month
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Code, unit tests, and tutorials for running PICRUSt2☆384Nov 27, 2025Updated 3 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆172Mar 13, 2026Updated 2 weeks ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆339Mar 16, 2026Updated last week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆130Oct 20, 2025Updated 5 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆162Feb 13, 2026Updated last month
- ☆88May 22, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- The second version of the Kraken taxonomic sequence classification system☆886Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bioinformatics program inStrain☆182Mar 12, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago
- Read alignment statistics for metagenomics☆392Mar 16, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆325Mar 18, 2026Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆404Mar 2, 2026Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆710Updated this week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆161Apr 23, 2025Updated 11 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆371Aug 1, 2025Updated 7 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆220Jan 27, 2025Updated last year
- Ultra-fast and memory-efficient (meta-)genome assembler☆699Oct 28, 2025Updated 4 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,261Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- A complete pipeline for metagenomic analysis☆440Mar 11, 2026Updated 2 weeks ago
- DAS Tool☆169May 2, 2024Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆30May 1, 2025Updated 10 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆222Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R package for downstream data analysis of microbiome omics data☆273Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆227Jan 20, 2026Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆403Mar 18, 2026Updated last week
- SPAdes Genome Assembler☆919Mar 17, 2026Updated last week
- ☆16Dec 16, 2024Updated last year
- Metagenome analysis pipeline☆100Jul 26, 2021Updated 4 years ago