HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
☆249Jul 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for humann
Users that are interested in humann are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆418Updated this week
- bioBakery tools for meta'omic profiling☆322Jul 17, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆616May 20, 2026Updated 2 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆152Jul 11, 2026Updated 2 weeks ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code, unit tests, and tutorials for running PICRUSt2☆394Nov 27, 2025Updated 7 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆180Jul 17, 2026Updated last week
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆357Mar 16, 2026Updated 4 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆169Jun 10, 2026Updated last month
- ☆90May 22, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆272Mar 20, 2025Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆140Jul 8, 2026Updated 2 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆926Jul 9, 2026Updated 2 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆474Jul 28, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics program inStrain☆191Mar 12, 2026Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Read alignment statistics for metagenomics☆401Jul 10, 2026Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆349Jul 16, 2026Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆409Mar 2, 2026Updated 4 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆168Apr 23, 2025Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- Fast genome-wide functional annotation through orthology assignment☆757May 22, 2026Updated 2 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆382Aug 1, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆229Mar 24, 2026Updated 4 months ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆721Oct 28, 2025Updated 8 months ago
- Accelerated BLAST compatible local sequence aligner.☆1,312Jul 13, 2026Updated last week
- ☆14Apr 3, 2025Updated last year
- DAS Tool☆177May 2, 2024Updated 2 years ago
- A complete pipeline for metagenomic analysis☆451Jul 11, 2026Updated 2 weeks ago
- An R package for downstream data analysis of microbiome omics data☆286Jul 11, 2026Updated 2 weeks ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ALDEx_bioc is the working directory for updating bioconductor☆32Mar 27, 2026Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- CAMISIM: Simulating metagenomes and microbial communities☆229Jul 16, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆233Jul 9, 2026Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆425May 20, 2026Updated 2 months ago
- SPAdes Genome Assembler☆954Jun 16, 2026Updated last month
- code repo for mobileOG-db☆49Nov 6, 2025Updated 8 months ago