biobakery / humannLinks
HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
☆225Updated last week
Alternatives and similar repositories for humann
Users that are interested in humann are comparing it to the libraries listed below
Sorting:
- A user-friendly workflow for phylogenomics☆222Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated last month
- bioBakery tools for meta'omic profiling☆297Updated 6 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆195Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆360Updated 4 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆136Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆163Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆265Updated last month
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆253Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆276Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 3 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- Bacterial ribosomal RNA predictor☆262Updated last week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆227Updated 3 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Pan-genome wide association studies☆205Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆219Updated this week
- A robust, extensible metagenomics pipeline☆174Updated this week
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆129Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆383Updated 2 weeks ago
- Rapid comparison and dereplication of genomes☆321Updated last month
- A tool to circularize genome assemblies☆249Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆196Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆287Updated 3 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆172Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆239Updated 8 months ago