Metagenomic sequence data analysis pipeline
☆36Sep 5, 2025Updated 10 months ago
Alternatives and similar repositories for Metagenomic-Analysis-Pipeline
Users that are interested in Metagenomic-Analysis-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LorMe package for R：Lightening One-code Resolving Microbial Ecology Program☆18Updated this week
- Using R language in microbiome analysis☆359May 10, 2023Updated 3 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- ☆19Dec 16, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- This is a ggplot2 geom for plotting and comparing the ROC curves☆10Jul 6, 2016Updated 10 years ago
- ☆11May 31, 2019Updated 7 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆152Jul 11, 2026Updated 2 weeks ago
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 6 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆155Feb 5, 2026Updated 5 months ago
- Easy Amplicon data analysis pipeline☆369Apr 20, 2026Updated 3 months ago
- Analyses in R and Python Using curatedMetagenomicData☆38Nov 16, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 7 months ago
- A multi-country analysis of the short-term mortality risks of sulphur dioxide☆12Feb 13, 2025Updated last year
- Scanning and visualization for variable gap motifs.☆18Aug 6, 2024Updated last year
- ☆14Nov 1, 2020Updated 5 years ago
- Create Regional Association Plots☆13May 27, 2026Updated last month
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆11Apr 28, 2026Updated 2 months ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- a nextflow pipeline for creating a pangenome with minigraph-cactus☆16Sep 13, 2024Updated last year
- ☆13Sep 1, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 27, 2019Updated 7 years ago
- pine教学课程源码☆12Mar 21, 2025Updated last year
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 10 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆32Mar 27, 2026Updated 3 months ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆21May 20, 2025Updated last year
- ☆24Feb 23, 2023Updated 3 years ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- This repo contains source code and datasets used in code for Deep transfer learning enables lesion tracing of circulating tumor cells(CTC…☆12Jun 26, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Deep Treatment Learning (R)☆17Nov 9, 2022Updated 3 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆13Mar 4, 2023Updated 3 years ago
- EasyMultiOmics: An R package for comprehensive multi-omics data mining in systematic microbiome research☆108Dec 17, 2025Updated 7 months ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 6 years ago
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year