Alternatives and similar repositories for Metagenomic-Analysis-Pipeline

Users that are interested in Metagenomic-Analysis-Pipeline are comparing it to the libraries listed below

• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆202Updated 3 weeks ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆152Updated 10 months ago
• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆135Updated last month
• rvaldes / IPHOMED
  IPHOMED
  ☆10Updated last month
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆98Updated 3 years ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• GRONINGEN-MICROBIOME-CENTRE / Groningen-Microbiome
  Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…
  ☆57Updated last month
• biolxy / handbook-cancer-genomics
  my first book, Biological information analysis of cancer tumors
  ☆26Updated 3 years ago
• xuzhougeng / org.Osativa.eg.db
  ☆20Updated 5 years ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆273Updated last month
• YongxinLiu / EasyMicrobiome
  ☆113Updated last week
• YongxinLiu / MicrobiomeProtocol
  Microbiome Protocol eBook related documents and scripts.
  ☆48Updated 4 years ago
• iMetaScience / iMetaPlot
  iMeta teaches you to plot
  ☆54Updated 2 years ago
• Asa12138 / ReporterScore
  Generalized Reporter Score-based Functional Enrichment Method for Omics Data
  ☆75Updated 3 weeks ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆146Updated last year
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆130Updated last year
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆137Updated 5 years ago
• ZihaoShu / Tax4Fun2
  This is an unofficial repo for Tax4Fun2
  ☆25Updated 3 years ago
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 6 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 4 years ago
• alexa-kur / miQTL_cookbook
  ☆45Updated 5 years ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆163Updated last month
• pzweuj / pzweuj.github.io
  Go to
  ☆36Updated this week
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆212Updated 2 weeks ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 6 years ago
• xryanglab / RiboCode
  release version
  ☆54Updated 2 years ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆112Updated last year
• Xinglab / rmats2sashimiplot
  ☆147Updated last month
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆126Updated 3 weeks ago