wanjinhu / Metagenomic-Analysis-PipelineLinks
Metagenomic sequence data analysis pipeline
☆33Updated this week
Alternatives and similar repositories for Metagenomic-Analysis-Pipeline
Users that are interested in Metagenomic-Analysis-Pipeline are comparing it to the libraries listed below
Sorting:
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆205Updated 2 weeks ago
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆137Updated 2 months ago
- Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groning…☆57Updated 2 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆152Updated 11 months ago
- ☆46Updated 5 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- iMeta teaches you to plot☆53Updated 2 years ago
- Metagenome analysis pipeline☆99Updated 4 years ago
- ☆20Updated 5 years ago
- IPHOMED☆10Updated 2 months ago
- Microbiome Protocol eBook related documents and scripts.☆50Updated 4 years ago
- DEG analysis and KEGG/GO enrichment analysis☆69Updated 7 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆113Updated last year
- ☆135Updated 5 years ago
- A companion R package for the MicrobiomeAnalyst web server☆127Updated last month
- This is an unofficial repo for Tax4Fun2☆26Updated 3 years ago
- Generalized Reporter Score-based Functional Enrichment Method for Omics Data☆75Updated last month
- A Shiny App for Interactive RNAseq Analysis and Visualization☆13Updated last year
- ☆116Updated 2 weeks ago
- A simple plot library☆52Updated 8 years ago
- Go to☆36Updated 3 weeks ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆274Updated 2 months ago
- Scripts for stat and plot figures in rice microbiome paper☆19Updated 6 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Step-by-step analysis pipeline for RNA-seq data☆135Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆125Updated last month
- ☆148Updated 2 months ago
- Network analysis for multi-omics☆73Updated last month
- ☆38Updated last year
- Scripts for next generation sequencing☆48Updated 5 years ago