Alternatives and similar repositories for QIIME2ChineseManual

Users that are interested in QIIME2ChineseManual are comparing it to the libraries listed below

• YongxinLiu / EasyAmplicon
  Easy Amplicon data analysis pipeline
  ☆317Updated this week
• YongxinLiu / EasyMetagenome
  Easy Metagenome Pipeline
  ☆466Updated last month
• taowenmicro / EasyMicrobiomeR
  Using R language in microbiome analysis
  ☆339Updated 2 years ago
• YongxinLiu / MicrobiomeStatPlot
  Interpretation and visualization of microbiome charts
  ☆500Updated last month
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆441Updated 2 years ago
• YongxinLiu / Note
  ☆126Updated 3 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆99Updated 4 years ago
• YongxinLiu / EasyMicrobiome
  ☆120Updated last month
• picrust / picrust2
  Code, unit tests, and tutorials for running PICRUSt2
  ☆369Updated 5 months ago
• indexofire / pathongs
  Pathogen NGS Documentary
  ☆151Updated last year
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆364Updated last week
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆427Updated 2 weeks ago
• biobakery / biobakery
  bioBakery tools for meta'omic profiling
  ☆284Updated 3 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆239Updated 4 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆270Updated 8 months ago
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆350Updated last month
• TransDecoder / TransDecoder
  TransDecoder source
  ☆297Updated 3 weeks ago
• wwood / kingfisher-download
  Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
  ☆274Updated last month
• TongZhou2017 / itol.toolkit
  Helper Functions for Interactive Tree Of Life (iTOL)
  ☆173Updated this week
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆384Updated 3 months ago
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆372Updated last year
• usadellab / Trimmomatic
  ☆266Updated 3 weeks ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆314Updated 2 years ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆388Updated 2 years ago
• biobakery / humann
  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
  ☆211Updated last week
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆395Updated last year
• LangilleLab / microbiome_helper
  A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
  ☆452Updated 8 months ago
• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆344Updated 7 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆423Updated 7 months ago
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆434Updated 4 months ago