ankitbioinfo / nico_tutorialLinks
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.
☆14Updated last month
Alternatives and similar repositories for nico_tutorial
Users that are interested in nico_tutorial are comparing it to the libraries listed below
Sorting:
- ☆30Updated 8 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 7 months ago
- ☆21Updated 3 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated last month
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 10 months ago
- ☆17Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- Hierarchical Cell Annotation☆26Updated last year
- ☆40Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- ☆14Updated 5 months ago
- ☆34Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- ☆32Updated 10 months ago
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- ☆61Updated 4 months ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- ☆20Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- ☆25Updated 2 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- ☆14Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago