mattjones315 / KPTracer-release
Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
☆12Updated last year
Alternatives and similar repositories for KPTracer-release:
Users that are interested in KPTracer-release are comparing it to the libraries listed below
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- ☆33Updated 11 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆37Updated 2 weeks ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆32Updated 5 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12Updated 10 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- Functional Inference of Gene Regulation☆41Updated 9 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- Create cisTarget databases☆47Updated 2 months ago
- ☆30Updated 2 months ago
- cell type specific, trait-associated gene regulation☆21Updated last week
- ☆36Updated 7 months ago
- ☆18Updated 7 months ago
- ☆47Updated 8 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- The scripts used for the analyses in TOME project☆23Updated 4 months ago
- Single cell epigenomic clustering based on accessibility pattern☆22Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆12Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 9 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated 9 months ago