Alternatives and similar repositories for KPTracer-release

Users that are interested in KPTracer-release are comparing it to the libraries listed below

• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 9 months ago
• gxiaolab / scAllele
  ☆37Updated last year
• jeongdo801 / scNOVA
  scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
  ☆11Updated 2 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆40Updated last week
• petervangalen / MAESTER-2021
  Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
  ☆12Updated last year
• UPSUTER / GEMLI
  ☆32Updated 6 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 4 months ago
• snehamitra / SCARlink
  ☆55Updated last month
• WanluLiuLab / scAtlasVAE
  ☆37Updated last month
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆40Updated last month
• wenweixiong / MARVEL
  ☆49Updated last year
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆33Updated 3 years ago
• alevax / pyviper
  Porting of Protein Activity and Pathway Inference to single cell and Python.
  ☆12Updated 3 months ago
• liuqivandy / SpaGene
  ☆23Updated 2 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆16Updated 3 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 7 months ago
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆41Updated 2 years ago
• AllonKleinLab / paper-data
  ☆20Updated this week
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆61Updated last year
• caleblareau / mtscATACpaper_reproducibility
  Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020
  ☆16Updated 2 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆24Updated last month
• ScialdoneLab / CIARA
  CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…
  ☆15Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• nghiavtr / SCmut
  ☆33Updated 6 years ago