Alternatives and similar repositories for KPTracer-release

Users that are interested in KPTracer-release are comparing it to the libraries listed below

• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• snehamitra / SCARlink
  ☆61Updated last month
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆45Updated 4 months ago
• kharchenkolab / scITD
  Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
  ☆62Updated last year
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆26Updated last year
• Galaxeee / TedSim
  ☆10Updated 3 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆17Updated 3 years ago
• colomemaria / epiAneufinder
  R package to detect breakpoints and assign somies to scATAC-seq data
  ☆42Updated last month
• gxiaolab / scAllele
  ☆39Updated 4 months ago
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated 3 months ago
• haoshijie13 / LISTA
  Codes used in LISTA project.
  ☆14Updated last year
• liuqivandy / SpaGene
  ☆25Updated 2 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 10 months ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated last month
• Caochris / SCOTIA
  ☆21Updated 6 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆32Updated 2 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated last year
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• AllonKleinLab / paper-data
  ☆21Updated 3 months ago
• yunguan-wang / Spacia
  ☆30Updated 8 months ago
• dpeerlab / pdac-progression
  ☆10Updated 2 years ago
• UPSUTER / GEMLI
  ☆32Updated 11 months ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆14Updated last year
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 9 months ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆34Updated last year
• WanluLiuLab / scAtlasVAE
  ☆40Updated 6 months ago