Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
☆15May 27, 2023Updated 3 years ago
Alternatives and similar repositories for KPTracer-release
Users that are interested in KPTracer-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Sep 27, 2022Updated 4 years ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆101Jul 23, 2026Updated 3 months ago
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆45Jun 12, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆23Jan 8, 2026Updated 9 months ago
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 4 months ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Jun 16, 2020Updated 6 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- ☆167Mar 20, 2026Updated 7 months ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆20Aug 12, 2025Updated last year
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆24Jun 3, 2026Updated 4 months ago
- ☆23Aug 25, 2022Updated 4 years ago
- Cookiecutter template for an R analysis project☆18Apr 4, 2018Updated 8 years ago
- Inferring CNV data from single cell ATAC seq☆29Jun 24, 2025Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Oct 12, 2026Updated last week
- bioinformatic pipeline for GLORI☆27Mar 30, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- My contributions to the weekly tidytuesday datasets and other data visualizations Made entirely using R (RLang).☆15Jan 19, 2023Updated 3 years ago
- Eva, a multimodal foundation model for spatial proteomics and histopathology data.☆21Oct 16, 2026Updated last week
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 5 years ago
- Multiple trajectory alignment of time-series data☆13Oct 14, 2023Updated 3 years ago
- ☆34Feb 25, 2025Updated last year
- single cell analysis of treatment naive and treated human PDAC☆27May 27, 2022Updated 4 years ago
- m5C mapping and site calling pipeline.☆13Jan 22, 2024Updated 2 years ago
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆22Apr 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆26Aug 15, 2023Updated 3 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 8 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- Related to (Zaccaria and Raphael, 2018), the repository contains the simulated data, the results of all methods involved in the compariso…☆12Dec 31, 2021Updated 4 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago