☆18Feb 20, 2025Updated last year
Alternatives and similar repositories for SpaTopic
Users that are interested in SpaTopic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 5 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated 2 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 2 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- ☆23Dec 8, 2023Updated 2 years ago
- ☆24Sep 25, 2025Updated 10 months ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆63Jul 22, 2024Updated 2 years ago
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆18Updated this week
- ☆10Jul 9, 2024Updated 2 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- ☆104May 4, 2026Updated 3 months ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 3 years ago
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆34Feb 25, 2025Updated last year
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated 2 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Apr 3, 2025Updated last year
- ☆61Aug 6, 2025Updated last year
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- ☆21Mar 4, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- ☆14Mar 17, 2026Updated 4 months ago
- ☆20Updated this week
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 9 months ago
- ☆14Aug 9, 2017Updated 9 years ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago