compbioNJU / SpaTopicLinks
☆15Updated 11 months ago
Alternatives and similar repositories for SpaTopic
Users that are interested in SpaTopic are comparing it to the libraries listed below
Sorting:
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 11 months ago
- ☆32Updated 11 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆30Updated 9 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- ☆54Updated 6 months ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆35Updated 9 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Updated 2 years ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- ☆34Updated 3 months ago
- Hierarchical Cell Annotation☆26Updated last year
- Code for spatial subclone paper☆16Updated last year
- ☆32Updated 11 months ago
- ☆17Updated 2 years ago
- ☆33Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Updated last month
- ☆21Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Repo with analysis code for the vascular atlas paper☆10Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆25Updated 2 years ago
- ☆40Updated 2 years ago
- ☆62Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- ☆33Updated 2 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year