Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
☆18Apr 15, 2025Updated 11 months ago
Alternatives and similar repositories for miRTalk
Users that are interested in miRTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆59Jun 9, 2025Updated 10 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Mar 27, 2026Updated 2 weeks ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 8 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 4 months ago
- a deep generative model for single-cell survival analysis☆20Dec 2, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- ☆13Sep 29, 2023Updated 2 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆27Dec 10, 2025Updated 3 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- ☆24Mar 3, 2026Updated last month
- Pan-Cancer Single Cell Classifier☆85May 30, 2024Updated last year
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆67Oct 16, 2025Updated 5 months ago
- ☆38Nov 26, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆32May 12, 2020Updated 5 years ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- ☆10Jul 17, 2023Updated 2 years ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆13Apr 2, 2026Updated last week
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- ☆11May 24, 2024Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆79Mar 28, 2026Updated last week
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 5 months ago
- ☆13Sep 30, 2024Updated last year
- ☆14Jun 10, 2025Updated 10 months ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆33Mar 18, 2026Updated 3 weeks ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- BulkSignalR☆27Mar 30, 2026Updated last week
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆21Jul 19, 2022Updated 3 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 8 months ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆12May 10, 2025Updated 10 months ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆113Jun 9, 2025Updated 10 months ago