Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
☆19Apr 15, 2025Updated last year
Alternatives and similar repositories for miRTalk
Users that are interested in miRTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆70Jun 9, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- ☆10Sep 2, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆87Jul 25, 2025Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- A classifier for tumor microenvironment subtype based on ensemble machine learning models☆11Jul 20, 2025Updated last year
- ☆27Jul 9, 2025Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆90Oct 6, 2023Updated 3 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 10 months ago
- Cell clustering and communication network inference for single-cell transcriptomics☆14Sep 18, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆48Nov 26, 2025Updated 11 months ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆23May 13, 2026Updated 5 months ago
- Pan-Cancer Single Cell Classifier☆86May 30, 2024Updated 2 years ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆13Oct 14, 2026Updated 2 weeks ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 6 years ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆38Jul 1, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆23Jul 19, 2022Updated 4 years ago
- ☆18Feb 20, 2025Updated last year
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 9 months ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆16Dec 1, 2025Updated 10 months ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆139Mar 22, 2023Updated 3 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- ☆10Jul 17, 2023Updated 3 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Bayesian MCMC matrix factorization algorithm☆74Aug 12, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆33May 12, 2020Updated 6 years ago
- ☆17Sep 29, 2023Updated 3 years ago
- Single-cell RNA-seq analysis of human germline cells and their niche cells☆11Jun 6, 2017Updated 9 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month