Coarse-graining of large single-cell RNA-seq data into metacells
☆110Apr 16, 2026Updated 6 months ago
Alternatives and similar repositories for SuperCell
Users that are interested in SuperCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- Metacells - Single-cell RNA Sequencing Analysis☆132Oct 5, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆203Aug 24, 2026Updated 2 months ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Metacell - Single-cell mRNA Analysis☆124Aug 25, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Easy single cell analysis platform for enrichment☆238Updated this week
- R client for the OmniPath web service☆176Updated this week
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆129Aug 24, 2026Updated 2 months ago
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆270Jul 8, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆313Dec 16, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆203Aug 12, 2025Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆44Nov 10, 2025Updated 11 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆248Jul 6, 2026Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆329Dec 19, 2025Updated 10 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 3 years ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 4 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Oct 15, 2026Updated 2 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆87Jul 25, 2025Updated last year
- A toolkit for single-cell immune profiling☆377Oct 16, 2026Updated last week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆314Jun 30, 2026Updated 3 months ago
- AUCell: score single cells with gene regulatory networks☆207Mar 9, 2024Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago
- BANKSY: spatial clustering☆170Updated this week
- ☆185May 4, 2026Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cells☆683Updated this week
- Analysis of cell-cell communication at single-cell resolution☆108Sep 10, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single-cell Case Control Analysis☆59Oct 13, 2026Updated 2 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆309Updated this week
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆253Aug 7, 2024Updated 2 years ago
- Interactively analyze single cell genomic data☆190Oct 9, 2026Updated 2 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago