GfellerLab / SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells
☆64Updated 3 weeks ago
Related projects: ⓘ
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆54Updated 4 months ago
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated last year
- ☆39Updated 3 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 2 years ago
- ☆53Updated 3 years ago
- scWGCNA☆53Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆36Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆57Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆21Updated 3 months ago
- ☆57Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆43Updated 4 years ago
- Using TCR and expression for sequence embedding☆47Updated 3 weeks ago
- scGSVA: Perform GSVA for single cell RNA seq☆44Updated last month
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆29Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆40Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- ☆38Updated 2 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆12Updated last year
- Single cell RNA-seq analysis bundle☆30Updated 5 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆62Updated 2 weeks ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆18Updated 8 months ago
- ☆25Updated 3 weeks ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆30Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated last week
- Collection of scripts for analysis of pan fetal immune atlas☆24Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆57Updated 2 months ago