GfellerLab / SuperCellLinks
Coarse-graining of large single-cell RNA-seq data into metacells
☆88Updated 2 months ago
Alternatives and similar repositories for SuperCell
Users that are interested in SuperCell are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- ☆50Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- ☆41Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- R package for semi-supervised single-cell data integration☆88Updated last month
- Pan-Cancer Single Cell Classifier☆78Updated last year
- Methods for decontamination of single cell data☆47Updated 6 months ago
- ☆62Updated 6 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- scWGCNA☆61Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- ☆56Updated 2 weeks ago
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated last week
- Functional Inference of Gene Regulation☆46Updated last year
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- R package for Protein activity analysis of single-cell RNAseq.☆83Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year