GfellerLab / SuperCellLinks
Coarse-graining of large single-cell RNA-seq data into metacells
☆90Updated 4 months ago
Alternatives and similar repositories for SuperCell
Users that are interested in SuperCell are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- ☆41Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- ☆50Updated 5 years ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆66Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- ☆62Updated 6 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- ☆43Updated 5 months ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆44Updated this week
- scWGCNA☆61Updated 3 years ago
- A R package for advanced single cell data viz☆68Updated 2 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 4 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated this week
- Framework for sensitive DE testing (using neighbourhoods)☆74Updated this week
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆36Updated 6 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 2 years ago
- ☆60Updated 2 months ago
- Functional Inference of Gene Regulation☆49Updated last year