Coarse-graining of large single-cell RNA-seq data into metacells
☆105Apr 16, 2026Updated 3 months ago
Alternatives and similar repositories for SuperCell
Users that are interested in SuperCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metacells - Single-cell RNA Sequencing Analysis☆128Apr 20, 2026Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- Methods to discover gene programs on single-cell data☆203Jul 21, 2026Updated 2 weeks ago
- Metacell - Single-cell mRNA Analysis☆123Jul 15, 2026Updated 3 weeks ago
- R client for the OmniPath web service☆171Aug 3, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆441May 11, 2026Updated 2 months ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 4 months ago
- ☆185May 4, 2026Updated 3 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Updated this week
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆239Jul 6, 2026Updated last month
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Updated this week
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆115May 27, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated 11 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆241Mar 2, 2026Updated 5 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- BANKSY: spatial clustering☆158May 30, 2026Updated 2 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assessing the purity of single cell population☆154Jun 3, 2022Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆84Jul 25, 2025Updated last year
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- ☆156Mar 20, 2026Updated 4 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆264Jul 8, 2026Updated last month
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆299Jul 13, 2026Updated 3 weeks ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆49Oct 29, 2025Updated 9 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆306Jun 30, 2026Updated last month
- ☆59Jan 2, 2024Updated 2 years ago
- ☆31Jul 27, 2026Updated last week
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- High dimensional weighted gene co-expression network analysis☆489Jun 16, 2026Updated last month
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 4 months ago