shenorrLabTRDF / TimeAxLinks
Multiple trajectory alignment of time-series data
☆13Updated 2 years ago
Alternatives and similar repositories for TimeAx
Users that are interested in TimeAx are comparing it to the libraries listed below
Sorting:
- cTPnet Package☆27Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- Unified access to several second-generation deconvolution methods☆91Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- ☆13Updated 5 months ago
- Reproducibility notebooks for scPoli☆22Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ACTIONet single-cell analysis framework☆44Updated last year
- Using BCR and expression for sequence embedding☆25Updated last month
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data☆18Updated 3 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Updated 3 months ago
- Materials and scripts for building cell type encyclopedia table☆20Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆57Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆43Updated 3 years ago
- ☆23Updated 3 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆62Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Updated 11 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- ☆21Updated last year