shenorrLabTRDF / TimeAxLinks
Multiple trajectory alignment of time-series data
☆13Updated 2 years ago
Alternatives and similar repositories for TimeAx
Users that are interested in TimeAx are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- cTPnet Package☆27Updated 3 years ago
- ☆23Updated 3 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆29Updated last month
- ☆13Updated 4 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- ACTIONet single-cell analysis framework☆44Updated last year
- ☆17Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- ☆15Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆88Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆57Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆33Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- ☆62Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Updated 3 months ago
- Reproducibility notebooks for scPoli☆21Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated 2 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 4 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Updated last month
- Information-based dimensionality reduction☆29Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago