shenorrLabTRDF / TimeAxLinks
Multiple trajectory alignment of time-series data
☆13Updated 2 years ago
Alternatives and similar repositories for TimeAx
Users that are interested in TimeAx are comparing it to the libraries listed below
Sorting:
- Unified access to several second-generation deconvolution methods☆88Updated 3 weeks ago
- ☆21Updated last month
- ☆13Updated 2 months ago
- ☆44Updated 3 years ago
- cTPnet Package☆27Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Reproducibility notebooks for scPoli☆21Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆28Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 2 months ago
- Using BCR and expression for sequence embedding☆25Updated 2 weeks ago
- ☆17Updated last year
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Updated 11 months ago
- Materials and scripts for building cell type encyclopedia table☆20Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆60Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- ACTIONet single-cell analysis framework☆43Updated last year
- ☆21Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Difference in Intercellular Communication from scRNA-seq data☆22Updated last month
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆55Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆47Updated 3 weeks ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆22Updated 2 years ago