shenorrLabTRDF / TimeAxLinks
Multiple trajectory alignment of time-series data
☆13Updated last year
Alternatives and similar repositories for TimeAx
Users that are interested in TimeAx are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- ☆13Updated last month
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- ☆19Updated 3 months ago
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated 3 weeks ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆29Updated 5 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- Unified access to several second-generation deconvolution methods☆73Updated this week
- ☆21Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆31Updated 2 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆21Updated last year
- Reproducibility notebooks for scPoli☆18Updated 2 years ago
- cTPnet Package☆25Updated 3 years ago
- ☆14Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated last year
- ☆58Updated last year
- ☆17Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆44Updated 3 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- ☆27Updated 5 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- Materials and scripts for building cell type encyclopedia table☆19Updated 7 months ago
- ACTIONet single-cell analysis framework☆42Updated 10 months ago