Alternatives and similar repositories for scMayoMap

Users that are interested in scMayoMap are comparing it to the libraries listed below

• campbio / decontX
  Methods for decontamination of single cell data
  ☆55Updated 11 months ago
• bio-Pixel / panVC
  ☆57Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• youqiongye / CRC_scRNAseq
  ☆48Updated 3 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆68Updated last year
• aliceygao / pan-Fibroblast
  ☆57Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆74Updated 3 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆65Updated 2 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆65Updated 3 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆18Updated 2 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆33Updated 3 months ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆87Updated 3 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆72Updated 5 months ago
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated this week
• yqq-chen / CRC_ICB
  ☆33Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆115Updated 9 months ago
• Teichlab / SKM_ageing_atlas
  ☆13Updated last year
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆49Updated 9 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆40Updated 5 years ago
• Coolgenome / iTALK
  ☆65Updated 6 years ago
• Chuxj / CRC-atlas
  ☆33Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 11 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆53Updated 7 months ago
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆33Updated last year
• Lan-lab / sc-GC
  ☆32Updated 3 years ago