Alternatives and similar repositories for scMayoMap:

Users that are interested in scMayoMap are comparing it to the libraries listed below

• campbio / decontX
  Methods for decontamination of single cell data
  ☆38Updated 3 weeks ago
• aliceygao / pan-Fibroblast
  ☆37Updated 7 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆41Updated 3 months ago
• youqiongye / CRC_scRNAseq
  ☆45Updated 3 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆65Updated last year
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated this week
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆45Updated 3 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆96Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆54Updated 2 years ago
• yqq-chen / CRC_ICB
  ☆29Updated last year
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆61Updated 2 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆70Updated 6 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆77Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆60Updated 4 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆27Updated 2 weeks ago
• ostunilab / PDAC_Nature_2023
  ☆17Updated last year
• Lan-lab / sc-GC
  ☆30Updated 2 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆55Updated 4 months ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆54Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆96Updated 6 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆77Updated 4 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆39Updated last year
• liziyie / Onco-fetal-CAF-in-HCC
  ☆19Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 3 months ago
• data2intelligence / CytoSig
  ☆49Updated 5 months ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago