gevaertlab / GBM360
Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications
☆18Updated 9 months ago
Related projects: ⓘ
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆23Updated 3 months ago
- Spatial Cellular Estimator for Tumors☆40Updated last month
- ☆26Updated 8 months ago
- ☆35Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆26Updated 4 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆41Updated 6 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆22Updated 6 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 2 months ago
- ☆13Updated this week
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆25Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆75Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆39Updated this week
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆30Updated 3 months ago
- ☆12Updated 10 months ago
- ☆12Updated last month
- Reproducing result from the paper☆33Updated 3 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆41Updated last year
- Bayesian Analytics for Spatial Segmentation☆19Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆18Updated last month
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆36Updated 3 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆48Updated 2 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆56Updated 2 years ago
- ☆20Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Updated 2 years ago
- domain adaptation of spatial and single-cell transcriptome☆22Updated 7 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆21Updated 4 years ago
- Spatially resolved transcriptomic analysis☆46Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆28Updated 2 months ago