Alternatives and similar repositories for scPRINT-old1

Users that are interested in scPRINT-old1 are comparing it to the libraries listed below

• GET-Foundation / gcell
  Python playground for cell-type-specific biology
  ☆10Updated this week
• marcovito / sma
  ☆13Updated last year
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated 8 months ago
• quon-titative-biology / scProjection
  Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
  ☆13Updated last year
• ajaynadig / TRADEtools
  ☆18Updated 2 months ago
• theislab / cross_system_integration
  ☆13Updated last month
• broadinstitute / celligner
  tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.
  ☆11Updated last year
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆22Updated last week
• SchubertLab / mvTCR_reproducibility
  Reproducibility Repo for mvTCR paper
  ☆13Updated last year
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆17Updated 6 months ago
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆11Updated last year
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 10 months ago
• Center-for-Health-Data-Science / multiDGD
  ☆24Updated 3 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆33Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated 2 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 4 months ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆19Updated 3 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆24Updated 3 weeks ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆13Updated 7 months ago
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆29Updated last month
• sdentro / copykat_pipeline
  ☆12Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆17Updated last week
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• kris-nader / scTherapy
  Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…
  ☆11Updated 2 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 2 months ago