pachterlab / concordexRLinks
Compute the neighborhood consolidation matrix and identify SHRs
☆13Updated last month
Alternatives and similar repositories for concordexR
Users that are interested in concordexR are comparing it to the libraries listed below
Sorting:
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated last year
- ☆23Updated 2 months ago
- ☆25Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated 11 months ago
- ☆66Updated last month
- An r package that works as a wrapper to homologene☆46Updated last year
- Single-cell analysis with non-negative matrix factorization☆45Updated last week
- ☆21Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆28Updated 5 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆33Updated last month
- R package for Bioconductor submission☆35Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆16Updated 3 years ago
- R API and htmlwidget for Vitessce☆41Updated 9 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Toolkit for Single-Cell Velocity☆58Updated last week
- Hierarchical classification of cells☆25Updated 11 months ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆14Updated 10 months ago
- Code used for muti cellular factor analysis☆14Updated last year
- Building Gene Sets and Mapping mFISH Data☆16Updated 2 years ago
- ☆16Updated 3 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- A database of useful gene signatures for single-cell analysis☆25Updated last month
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆27Updated last month
- Cell type pipes for R☆51Updated last year