Alternatives and similar repositories for Libra

Users that are interested in Libra are comparing it to the libraries listed below

• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• huayc09 / SeuratExtend
  ☆193Updated 3 weeks ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆171Updated last month
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆198Updated last week
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆120Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆212Updated 3 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆128Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆167Updated 3 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆299Updated 3 years ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆215Updated last year
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆198Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆225Updated last year
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆140Updated 5 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆279Updated this week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• navinlabcode / copykat
  ☆257Updated last month
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆183Updated 2 years ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆198Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆147Updated 5 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆168Updated 2 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆193Updated last week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆190Updated 3 weeks ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 6 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆199Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆139Updated last year
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆168Updated 2 years ago