katherine-benjamin / topact-paperLinks
Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
☆12Updated last year
Alternatives and similar repositories for topact-paper
Users that are interested in topact-paper are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆11Updated 4 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 8 months ago
- CAST package☆40Updated 7 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 8 months ago
- ☆28Updated 3 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- ☆16Updated 7 months ago
- Code for spatial subclone paper☆11Updated 4 months ago
- ☆18Updated last month
- ☆11Updated last year
- Codes used in LISTA project.☆11Updated last year
- Publically accessible code for DIISCO method☆10Updated 7 months ago
- ☆12Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆22Updated 2 years ago
- Python implementation of Gene Trajectory☆25Updated 9 months ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 11 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆35Updated 2 weeks ago
- ☆13Updated 7 months ago
- Data analysis for the moscot-framework project☆12Updated 6 months ago
- Spatial Single Cell transcriptomic library☆17Updated this week
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 2 months ago
- ☆16Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- ☆9Updated 11 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆22Updated last month
- Code used to process the data of the HBCA project☆27Updated last year