katherine-benjamin / topact-paperLinks
Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
☆13Updated last year
Alternatives and similar repositories for topact-paper
Users that are interested in topact-paper are comparing it to the libraries listed below
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆13Updated last month
- Spatial direct messaging detected by bivariate Moran☆28Updated 2 months ago
- Code for spatial subclone paper☆13Updated 7 months ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated 11 months ago
- ☆22Updated 2 years ago
- ☆30Updated 4 months ago
- Python implementation of Gene Trajectory☆26Updated last year
- ☆31Updated 6 months ago
- CAST package☆40Updated 10 months ago
- ☆24Updated 2 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆17Updated 6 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 3 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- Scanner of specific spatial patterns in tissues☆13Updated 3 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆15Updated 2 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆31Updated 2 months ago
- Spatial One☆28Updated 10 months ago
- ☆13Updated last year
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆12Updated 11 months ago
- ☆21Updated 8 months ago
- cell type specific, trait-associated gene regulation☆27Updated 5 months ago
- Spatial Single Cell transcriptomic library☆18Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆26Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 10 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 2 weeks ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆29Updated 7 months ago