Spencerfar / LatentVeloView external linksLinks
☆26Aug 15, 2023Updated 2 years ago
Alternatives and similar repositories for LatentVelo
Users that are interested in LatentVelo are comparing it to the libraries listed below
Sorting:
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆24Oct 21, 2025Updated 3 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆78Jul 20, 2025Updated 6 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Nov 12, 2024Updated last year
- Bayesian model for RNA velocity estimation of periodic manifolds☆34Jun 25, 2024Updated last year
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Create PyTorch Datasets from AnnData☆21Jan 6, 2026Updated last month
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 3 years ago
- ☆47May 4, 2024Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Feb 3, 2025Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 8 months ago
- trajectory inference☆105Jan 27, 2025Updated last year
- CellPolaris☆12Jan 11, 2026Updated last month
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 3 years ago
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Nov 24, 2022Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- ☆52Mar 23, 2025Updated 10 months ago
- Developmental Spatiotemporal Optimal Transport☆13Mar 19, 2025Updated 10 months ago
- ☆15Jul 8, 2022Updated 3 years ago
- ☆17Dec 9, 2025Updated 2 months ago
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 2 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- This is the alpha version of the CellOracle package☆416Feb 3, 2026Updated last week
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Nov 2, 2025Updated 3 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- Deep Generative Modeling of RNA Velocity☆37Oct 21, 2025Updated 3 months ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 8 months ago
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 4 months ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Feb 6, 2026Updated last week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Mar 20, 2025Updated 10 months ago
- ☆21Dec 10, 2025Updated 2 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 8 months ago