Winnie09 / GPTCelltype

Related projects ⓘ

Alternatives and complementary repositories for GPTCelltype

• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆124Updated 2 years ago
• crazyhottommy / TCR-BCR-seq-analysis
  T/B cell receptor sequencing analysis notes
  ☆212Updated 3 months ago
• IanevskiAleksandr / sc-type
  ☆239Updated last week
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆184Updated 7 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆184Updated 5 months ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆300Updated 5 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆382Updated 8 months ago
• erilu / bulk-rnaseq-analysis
  A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression an…
  ☆66Updated 4 years ago
• sunduanchen / Scissor
  Scissor package
  ☆189Updated 6 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆170Updated 2 months ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆195Updated last month
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆283Updated last week
• STOmics / SAW
  ☆145Updated 2 months ago
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆92Updated last month
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆210Updated 6 months ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆155Updated 7 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆252Updated this week
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆119Updated 6 months ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆103Updated last year
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆188Updated this week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆218Updated last year
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆204Updated last week
• navinlabcode / copykat
  ☆210Updated 4 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆216Updated this week
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆132Updated 2 years ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆297Updated 4 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated last year
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆246Updated last month
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆158Updated this week
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆292Updated last month