biomap-research / scFoundationLinks
☆378Updated last month
Alternatives and similar repositories for scFoundation
Users that are interested in scFoundation are comparing it to the libraries listed below
Sorting:
- ☆341Updated 2 years ago
- ☆335Updated 7 months ago
- ☆377Updated 2 weeks ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆320Updated 10 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆234Updated 9 months ago
- Arc Virtual Cell Atlas☆470Updated last week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆476Updated last week
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆64Updated 11 months ago
- Awesome-AI-Virtual-Cell☆141Updated last week
- ☆88Updated 4 months ago
- ☆297Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆135Updated last month
- GeneCompass☆102Updated 3 weeks ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆442Updated last month
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- ☆828Updated 8 months ago
- Single-Cell (Perturbation) Model Library☆86Updated 2 weeks ago
- ☆134Updated 8 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆71Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆156Updated 10 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆230Updated 6 months ago
- A model developed for the generation of scRNA-seq data☆81Updated 10 months ago
- ☆121Updated 10 months ago
- ☆32Updated last year
- ☆149Updated last year
- This is the alpha version of the CellOracle package☆404Updated 11 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆278Updated 6 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆383Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year