Alternatives and similar repositories for scFoundation

Users that are interested in scFoundation are comparing it to the libraries listed below

• TencentAILabHealthcare / scBERT
  ☆347Updated 2 years ago
• theislab / single-cell-transformer-papers
  ☆337Updated 8 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆394Updated 2 weeks ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆331Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆238Updated 11 months ago
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆492Updated last month
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆65Updated last year
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆512Updated last week
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆163Updated 3 weeks ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆109Updated 2 months ago
• jkobject / geneformer
  ☆92Updated 5 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆149Updated 2 months ago
• yiqunchen / GenePT
  ☆307Updated last year
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆452Updated 2 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆89Updated 2 weeks ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆74Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• OmicsML / awesome-deep-learning-single-cell-papers
  ☆834Updated 9 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆164Updated 11 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆84Updated 2 weeks ago
• Genentech / SpatialAgent
  ☆134Updated 9 months ago
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆285Updated 8 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆233Updated last month
• bowang-lab / scGPT-spatial
  ☆126Updated 11 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆120Updated 2 weeks ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• zou-group / GenePert
  GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction
  ☆20Updated last year
• OmicsML / dance
  DANCE: a deep learning library and benchmark platform for single-cell analysis
  ☆384Updated 2 weeks ago
• snap-stanford / SATURN
  ☆155Updated last year