☆405Nov 23, 2025Updated 4 months ago
Alternatives and similar repositories for scFoundation
Users that are interested in scFoundation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆1,537Nov 12, 2025Updated 5 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆253Feb 26, 2026Updated last month
- ☆356Dec 13, 2023Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆354Feb 1, 2025Updated last year
- ☆105Aug 18, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated last year
- ☆82Jan 9, 2026Updated 3 months ago
- GeneCompass☆114Feb 10, 2026Updated 2 months ago
- ☆430Jan 21, 2026Updated 2 months ago
- ☆846Apr 20, 2025Updated 11 months ago
- ☆341May 23, 2025Updated 10 months ago
- ☆101Aug 26, 2025Updated 7 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆159Nov 23, 2025Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆85Aug 10, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A model developed for the generation of scRNA-seq data☆89Jan 21, 2026Updated 2 months ago
- ☆314Mar 18, 2024Updated 2 years ago
- ☆134Feb 13, 2025Updated last year
- Arc Virtual Cell Atlas☆512Feb 12, 2026Updated 2 months ago
- 🏃 The go-to single-cell Foundation Model☆144Feb 20, 2026Updated last month
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆102Mar 28, 2024Updated 2 years ago
- ☆164Jul 3, 2024Updated last year
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆69Dec 29, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reference mapping for single-cell genomics☆402Mar 21, 2026Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,597Updated this week
- Code for evaluating single cell foundation models scBERT and scGPT☆47Aug 25, 2024Updated last year
- Benchmarking analysis of data integration tools☆410Updated this week
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- ☆224May 6, 2024Updated last year
- This is the alpha version of the CellOracle package☆439Feb 3, 2026Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆125Mar 24, 2026Updated 3 weeks ago
- ☆65Sep 13, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆43Feb 19, 2026Updated last month
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆238Mar 17, 2026Updated last month
- ☆57Mar 23, 2025Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆144Aug 14, 2024Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆69Oct 16, 2025Updated 6 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- ☆26Mar 12, 2026Updated last month