biomap-research / scFoundation
☆306Updated last month
Alternatives and similar repositories for scFoundation:
Users that are interested in scFoundation are comparing it to the libraries listed below
- ☆291Updated last year
- ☆303Updated 2 weeks ago
- ☆245Updated 2 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆242Updated last month
- UCE is a zero-shot foundation model for single-cell gene expression data☆187Updated 3 weeks ago
- Arc Virtual Cell Atlas☆232Updated this week
- ☆252Updated last year
- GeneCompass☆71Updated 8 months ago
- ☆55Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆138Updated last year
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆53Updated 2 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆181Updated last month
- Graph-linked unified embedding for single-cell multi-omics data integration☆406Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆84Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆78Updated 11 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆116Updated 3 weeks ago
- ☆187Updated 10 months ago
- ☆743Updated 5 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆64Updated 2 months ago
- A model developed for the generation of scRNA-seq data☆52Updated 3 weeks ago
- Benchmarking analysis of data integration tools☆339Updated 2 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆344Updated 3 weeks ago
- Reference mapping for single-cell genomics☆358Updated 3 weeks ago
- ☆117Updated 8 months ago
- Official repository of the data-driven deconvolution approach Sweetwater.☆12Updated 8 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆57Updated 9 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆40Updated 6 months ago
- This is the alpha version of the CellOracle package☆341Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆283Updated 9 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆111Updated last month