Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
☆13Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for 5loclung
Users that are interested in 5loclung are comparing it to the libraries listed below
Sorting:
- ☆13Apr 27, 2022Updated 3 years ago
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- ☆20Feb 28, 2025Updated last year
- ☆21Dec 23, 2024Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆25Aug 24, 2023Updated 2 years ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- ☆10Apr 28, 2023Updated 2 years ago
- A shiny app for metacell analysis☆10Updated this week
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- CellRank 2's reproducibility repository.☆15Sep 4, 2024Updated last year
- ☆28Jan 15, 2024Updated 2 years ago
- ☆13Dec 15, 2021Updated 4 years ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- ☆13Dec 14, 2023Updated 2 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆16Apr 18, 2023Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- ☆13Jan 24, 2024Updated 2 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆12Mar 22, 2023Updated 2 years ago
- AD regulome analysis☆14Apr 4, 2023Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated 11 months ago
- ☆13Aug 9, 2022Updated 3 years ago
- ☆17Mar 6, 2024Updated last year
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- Repository for codes for the HBCA paper☆42Mar 17, 2023Updated 2 years ago
- ☆20May 1, 2023Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23May 16, 2025Updated 9 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆132Sep 6, 2024Updated last year
- ☆41Jan 12, 2026Updated last month
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Network annotation visualization☆18May 21, 2025Updated 9 months ago