elo073 / 5loclung
Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung
☆10Updated last year
Alternatives and similar repositories for 5loclung:
Users that are interested in 5loclung are comparing it to the libraries listed below
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated 2 months ago
- ☆9Updated 8 months ago
- ☆19Updated 10 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆17Updated 6 months ago
- ☆21Updated last month
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 weeks ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- Computational pipeline to process EasySci-RNA data.☆18Updated last year
- ☆17Updated 4 years ago
- ☆16Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆16Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 5 months ago
- Build predicted cell-cell interaction networks from single-cell data.☆9Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- ☆16Updated 7 months ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 3 years ago
- ☆10Updated last month
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆21Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- ☆10Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- ☆12Updated last year
- Scripts from the GBM cellular states paper☆18Updated 4 years ago