bowang-lab / scGPT
☆1,231Updated last month
Alternatives and similar repositories for scGPT
Users that are interested in scGPT are comparing it to the libraries listed below
Sorting:
- ☆766Updated 3 weeks ago
- ☆332Updated 3 months ago
- ☆312Updated last year
- ☆311Updated 2 months ago
- ☆277Updated 3 weeks ago
- https://www.sc-best-practices.org☆904Updated this week
- ☆258Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆372Updated 5 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆622Updated 2 weeks ago
- 🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics☆607Updated this week
- Graph-linked unified embedding for single-cell multi-omics data integration☆409Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆254Updated 3 months ago
- ☆567Updated last year
- Arc Virtual Cell Atlas☆281Updated last week
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆674Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,375Updated this week
- scripts and notebooks from sanbomics☆407Updated 5 months ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆430Updated this week
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆359Updated this week
- UCE is a zero-shot foundation model for single-cell gene expression data☆192Updated 2 months ago
- Gene Set Enrichment Analysis in Python☆627Updated last month
- This is the alpha version of the CellOracle package☆352Updated 4 months ago
- A list of scRNA-seq analysis tools☆698Updated this week
- List of software packages for multi-omics analysis☆780Updated last month
- Benchmarking analysis of data integration tools☆348Updated 4 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆657Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆332Updated last month
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆449Updated 4 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆263Updated last month
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,474Updated 2 years ago