aristoteleo / spateo-releaseLinks
Spatiotemporal modeling of spatial transcriptomics
☆294Updated this week
Alternatives and similar repositories for spateo-release
Users that are interested in spateo-release are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type classification☆369Updated 3 weeks ago
- A toolkit of spatial transcriptomic analysis.☆245Updated last week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆223Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆212Updated 3 months ago
- Benchmarking analysis of data integration tools☆358Updated 4 months ago
- Scanpy Tutorials.☆213Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆396Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆368Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆425Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆342Updated 3 months ago
- An open and interoperable data framework for spatial omics data☆283Updated this week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆358Updated 2 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆224Updated 4 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆193Updated 2 weeks ago
- This is the alpha version of the CellOracle package☆356Updated 4 months ago
- Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…☆208Updated this week
- Single-cell epigenomics analysis tools☆260Updated last week
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆201Updated last year
- Reference mapping for single-cell genomics☆365Updated 2 weeks ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆455Updated last week
- ☆201Updated last year
- Graph-linked unified embedding for single-cell multi-omics data integration☆411Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆300Updated 11 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆411Updated last month
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆157Updated this week
- ☆355Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆148Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆158Updated 2 years ago
- ☆126Updated 11 months ago
- Python package to perform enrichment analysis from omics data.☆196Updated this week