aristoteleo / spateo-release
Spatiotemporal modeling of spatial transcriptomics
☆283Updated last month
Alternatives and similar repositories for spateo-release:
Users that are interested in spateo-release are comparing it to the libraries listed below
- A tool for semi-automatic cell type classification☆360Updated 2 weeks ago
- A toolkit of spatial transcriptomic analysis.☆238Updated 2 weeks ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆354Updated last month
- A novel machine learning pipeline to analyse spatial transcriptomics data☆219Updated 11 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆363Updated 11 months ago
- Benchmarking analysis of data integration tools☆348Updated 3 months ago
- Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…☆200Updated this week
- An open and interoperable data framework for spatial omics data☆278Updated this week
- A package to help convert different single-cell data formats to each other☆420Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆205Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆386Updated 4 months ago
- Spatial omics analysis toolbox☆300Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆394Updated 3 weeks ago
- Scanpy Tutorials.☆212Updated last week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆218Updated 3 months ago
- ☆261Updated 5 months ago
- This is the alpha version of the CellOracle package☆348Updated 4 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆331Updated 2 months ago
- Python package to perform enrichment analysis from omics data.☆193Updated last week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆185Updated 2 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆168Updated 9 months ago
- Spatial alignment of single cell transcriptomic data.☆293Updated 10 months ago
- ☆354Updated 3 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆119Updated last year
- ☆119Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆198Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆326Updated 9 months ago
- Reference mapping for single-cell genomics☆363Updated 2 months ago
- ☆116Updated last year
- Perturbation Analysis in the scverse ecosystem.☆173Updated this week