Spatiotemporal modeling of spatial transcriptomics
☆342Feb 25, 2026Updated 5 months ago
Alternatives and similar repositories for spateo-release
Users that are interested in spateo-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolkit of spatial transcriptomic analysis.☆289Jul 17, 2026Updated last week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆505Updated this week
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆473Jan 22, 2026Updated 6 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆452Jul 13, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatial Single Cell Analysis in Python☆587Updated this week
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- Spatial-Linked Alignment Tool☆94Dec 20, 2024Updated last year
- Spatial alignment of single cell transcriptomic data.☆370Jul 1, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆253Jul 12, 2026Updated 2 weeks ago
- CellRank: dynamics from multi-view single-cell data☆454Jul 16, 2026Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Bayesian Segmentation of Spatial Transcriptomics Data☆208Jun 26, 2026Updated last month
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆194Sep 18, 2024Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆116Jul 4, 2025Updated last year
- trajectory inference☆109Jan 27, 2025Updated last year
- ☆142Jun 25, 2026Updated last month
- BANKSY: spatial clustering☆158May 30, 2026Updated last month
- A tool for semi-automatic cell type classification☆498May 22, 2026Updated 2 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆85Jul 4, 2026Updated 3 weeks ago
- ☆63Jul 23, 2024Updated 2 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- End-to-end analysis of spatial multi-omics data☆119May 15, 2026Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆103Feb 26, 2025Updated last year
- ☆155Mar 20, 2026Updated 4 months ago
- Spatial omics analysis toolbox☆385Jun 2, 2026Updated last month
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,166Updated this week
- ☆133Mar 27, 2022Updated 4 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆263Jul 8, 2026Updated 3 weeks ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆628Jun 26, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆103Dec 11, 2023Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,669Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆383Updated this week
- Static plotting for spatialdata☆82Updated this week